Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001143-TA|BGIBMGA001143-PA|undefined
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 41 0.003
At2g40070.1 68415.m04923 expressed protein 38 0.022
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 35 0.21
At2g24310.1 68415.m02906 expressed protein 34 0.27
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 34 0.36
At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase, puta... 33 0.83
At4g27595.1 68417.m03964 protein transport protein-related low s... 32 1.1
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 32 1.1
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 32 1.1
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 32 1.1
At1g08500.1 68414.m00941 plastocyanin-like domain-containing pro... 32 1.1
At1g02110.1 68414.m00137 proline-rich family protein contains pr... 32 1.1
At5g62550.1 68418.m07850 expressed protein 32 1.5
At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1... 32 1.5
At5g50040.1 68418.m06197 invertase/pectin methylesterase inhibit... 31 1.9
At5g34910.1 68418.m04116 hypothetical protein 31 1.9
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 31 3.4
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 3.4
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical... 31 3.4
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 30 4.4
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 30 4.4
At1g34590.1 68414.m04299 hypothetical protein 30 4.4
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 5.9
At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5) iden... 29 7.8
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 40.7 bits (91), Expect = 0.003
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Query: 470 DTTINEAYNTISTTTIANLENDNEITTRALEKYPLGSSATK-DFFWNTSPTLDETTSHYK 528
+ I+E + +TT N E + E E+Y + D SPT ET +
Sbjct: 1824 EPAIDELMDATTTTDGDNEETEAENAEEKTEEYVEAQQDNEADEPVEESPTETETIPTEE 1883
Query: 529 EKR---ESVSTNPLTDSTT---EAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTP 582
E R E + PLTD + E + TL +E TD + + + + E P ++TP
Sbjct: 1884 ESRDQTEEENQEPLTDMESDKEEGELDLDTLEDLEEGTDVASMMRSPEKEEVQPETLATP 1943
Query: 583 LSSVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLSNLVSTMEPATEYYTSNDNTQT 642
S + ++ + E I+ T E + + E A +ND +
Sbjct: 1944 TQSPSR--METAMEEAETTIE--TPVEDDKTDEGGD------AAEEAADIPNNANDQQEA 1993
Query: 643 PRTQYLPITTS-TDSVYTTAPTIVTTIAQFIETS 675
P T P T++ T S +TAPT +T+A I +S
Sbjct: 1994 PETDIKPETSAATTSPVSTAPTTSSTLASAITSS 2027
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 37.9 bits (84), Expect = 0.022
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 479 TISTTTIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVSTNP 538
T+S+ T +L N + + P+ S + +PT + T+ SV+ +
Sbjct: 213 TVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSS-RLTPTASKPTTSTARSAGSVTRST 271
Query: 539 LTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSSFQTT 598
+ +T A P +ST + + T S TS IS + PIA++S TT
Sbjct: 272 PSTTTKSAGPSRSTTPLSRSTARSS--TPTSRPTLPPSKTISRSSTPTRRPIASASAATT 329
Query: 599 EKNIKLSTKAESEYVSYKP 617
N +S S KP
Sbjct: 330 TANPTISQIKPSSPAPAKP 348
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 34.7 bits (76), Expect = 0.21
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 9/172 (5%)
Query: 518 PTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPA 577
P L + T+ + + P EA P S+ + Q E+ ++ A S E A
Sbjct: 1143 PLLTQKTAQPEVAKPLALEEPTKPLAIEAPP--SSEAPQTESAPETAAAAESPAPETA-A 1199
Query: 578 VISTPL---SSVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLSNLVS-TMEPATEY 633
V +P ++V + A+ + T +E V + T L + P TE
Sbjct: 1200 VAESPAPGTAAVAEAPASETAAAPVDGPVTETVSEPPPVEKEETSLEEKSDPSSTPNTET 1259
Query: 634 YTSNDNTQTPRTQYLPITTSTDSVYTTAP--TIVTTIAQFIETSAITSNVLN 683
TS +NT T +TT+ TTAP T+ TT + E +A V N
Sbjct: 1260 ATSTENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPTENAATERRVTN 1311
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 34.3 bits (75), Expect = 0.27
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 557 KETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSS-----FQTTEKNIKLSTKAESE 611
K T D+ T L N+ PAV+ TP+ S + P + S F+T +N LS+ AESE
Sbjct: 37 KSTDSDN---TEVLGNQISPAVVKTPILSFSSPTSLDSINDDVFRTPPENASLSSAAESE 93
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 33.9 bits (74), Expect = 0.36
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 500 EKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKET 559
E + S+ F ++S +L + + H++ + STNP ++ + ++++ S+Q +T
Sbjct: 285 EMVQMASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQT 344
Query: 560 -TDDSFIATTSLQNENIPAVISTPLSS 585
D SF S +EN +P+S+
Sbjct: 345 LKDSSFSPLFSSSSENKQNKPLSPMSA 371
>At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
9-cis-epoxycarotenoid dioxygenase [Phaseolus
vulgaris][GI:6715257]; similar to neoxanthin cleavage
enzyme GI:9857290 from [Vigna unguiculata]
Length = 657
Score = 32.7 bits (71), Expect = 0.83
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 547 IPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSSFQTTEKNIKLST 606
IP+ T + +E+T S S + + ST SS + + SF +T +N KL
Sbjct: 37 IPKPQTAAFNQESTMASTTLLPSTSTQFLDRTFSTSSSSSRPKLQSLSFSSTLRNKKLVV 96
Query: 607 KAESEYVSYKPTYLSNLVSTMEPATEYYTSNDNTQTPRTQYLPITTSTDSVYTTAPTIVT 666
YVS S++ S+++ T S T +P TT+ +
Sbjct: 97 PC---YVSSSVNKKSSVSSSLQSPTFKPPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAA 153
Query: 667 TIAQFIETSAIT 678
+ +E + I+
Sbjct: 154 MVLDAVENAMIS 165
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 32.3 bits (70), Expect = 1.1
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 452 WLDPTNPTHENIIRSTQLDTTINEAYNTISTTTIANLENDNEITTRALEKYPLGS---SA 508
W+D N E +R I E +S + L D E+ T + Y L + SA
Sbjct: 998 WIDKGNENQELKVREASAAKRIEE----LSKMKESLL--DKELQTVIHDNYELKAREASA 1051
Query: 509 TKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTL-SVQKETTDDSFI 565
K S L+E +S +++ E +TNP +ST E ++S L ++ + DD+ I
Sbjct: 1052 LKKIE-ELSKLLEEASSTHEKGEEITNTNPFDNSTGEQKVQESPLEAIDRHLKDDTTI 1108
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 32.3 bits (70), Expect = 1.1
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 478 NTISTTTIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVSTN 537
+T S+TT + + T + + G+SA F +T + +S S++T
Sbjct: 340 STASSTTSSTTPSAPPQTASSSSSFSFGTSANSGFNLSTGSSAAPASS-TSGAVFSIATT 398
Query: 538 PLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSSFQT 597
T S+T A S T TS PA + S+ +A+S+ T
Sbjct: 399 TTTSSSTPAATSAPASSAPASTMAFPSFGVTSSATNTTPASSAATFSTTGFGLASSTPAT 458
Query: 598 TEKNI-------KLSTKA-ESEYVSYKPTY---LSNLVSTMEPATEYYTSNDNT 640
N K ST A S+ + P + L + ST PAT T+ T
Sbjct: 459 GSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPATSSATTTQTT 512
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 535 STNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSS 594
S+NP T+ ++ + +SVQ TT+ +F+A P S ++V+ P ++
Sbjct: 162 SSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPFPFYSSNNTTTVSQPPISND 221
Query: 595 FQTTEKNIKLSTKAES 610
++ L + + S
Sbjct: 222 LMNNVSSLNLFSSSTS 237
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 535 STNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSS 594
S+NP T+ ++ + +SVQ TT+ +F+A P S ++V+ P ++
Sbjct: 85 SSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPFPFYSSNNTTTVSQPPISND 144
Query: 595 FQTTEKNIKLSTKAES 610
++ L + + S
Sbjct: 145 LMNNVSSLNLFSSSTS 160
>At1g08500.1 68414.m00941 plastocyanin-like domain-containing
protein
Length = 228
Score = 32.3 bits (70), Expect = 1.1
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 341 DSRQSENSDINEYSEVEVTYDNISPVFATLPLI-ASTNIDCLGK--AFHCVNSTHFMICV 397
D +EN+D E+S + + PV ++PL+ +N G C HFMI V
Sbjct: 87 DYDNNENNDTTEWSAANPSATSPVPVSISVPLVKEGSNYFFSGNYDGEQCKFGQHFMINV 146
Query: 398 DIGAGF--SSTIDDFVIPCP 415
G G SS+ DD P P
Sbjct: 147 THGQGLPDSSSPDDAAAPGP 166
>At1g02110.1 68414.m00137 proline-rich family protein contains
proline-rich domain, INTERPRO:IPR000694
Length = 679
Score = 32.3 bits (70), Expect = 1.1
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 563 SFIATTSLQ-NENIPAVISTPLSSVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLS 621
SF A L +EN PAV P SS + P SS + +K + P LS
Sbjct: 54 SFAAGEPLSVSENTPAVFLRPSSSQDAPRVPSSHSPEPPPPPIRSKPKPTRPRRLPHILS 113
Query: 622 NLVSTMEPATEYY-TSNDNTQTPRT 645
+ + PAT +Y T++ N+ R+
Sbjct: 114 DSSPSSSPATSFYPTAHQNSTYSRS 138
>At5g62550.1 68418.m07850 expressed protein
Length = 487
Score = 31.9 bits (69), Expect = 1.5
Identities = 25/136 (18%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 473 INEAYNTISTTTIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRE 532
++E + ++ T +L NDN++ ++ P S+ T + D T + ++++
Sbjct: 220 VSETSSVVAEETAMSLNNDNDV--QSSFSTPGNSNITSE-ITKDDALQDSTVTKTTKEKD 276
Query: 533 SVSTNPLTDSTTE--AIPEKSTLSVQKE--TTDDSFIATTSLQNENIPAVISTPLSSVND 588
++ + +T++T E A+ + S KE DS + T+ + + + T +
Sbjct: 277 ALQDSSVTETTKEKDALQDSSVTETSKEEGALQDSSVTETTKEEDALQDSSVTETTKEEQ 336
Query: 589 PIATSSFQTTEKNIKL 604
+ T + T K++++
Sbjct: 337 ALETVTQGRTRKSLEV 352
>At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1)
identical to 14-3-3 GF14lambda GI:1345595 from
[Arabidopsis thaliana]
Length = 248
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 304 ASDKDVNMNKKRLSNAIKRLSTLGDS--LDDYITKQIRRDSRQSENSDINE 352
+SDK NM K+ AI L TLG+ D + Q+ RD+ SD+ E
Sbjct: 193 SSDKACNMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQE 243
>At5g50040.1 68418.m06197 invertase/pectin methylesterase inhibitor
family protein contains similarity to pollen-specific
protein Bnm1 [Brassica napus] GI:1857671; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 175
Score = 31.5 bits (68), Expect = 1.9
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 491 DNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEK 550
D + L YP SAT F T+ TL+ S Y +K + N A E
Sbjct: 39 DKAFCAKTLNAYPAAGSATSQFQAATA-TLNLAIS-YADKSAGFTGN--------AAKEN 88
Query: 551 STLSVQKETTDDSFIA-TTSLQNENIPAVISTPLSSVNDPIATSSFQTTEKNIKLSTKAE 609
TL Q + D+F+ + SL++ IS ++ + + + S T + ++ +T
Sbjct: 89 PTLKTQFAASQDAFVTISKSLKSAASELKISPDTANYDVMVCSDSIATVKNLVEKNTDNS 148
Query: 610 SEYVSYKPTYLSNLVSTMEPAT 631
S+ V + L++ AT
Sbjct: 149 SKTVMTMTLMMEKLLTIAVGAT 170
>At5g34910.1 68418.m04116 hypothetical protein
Length = 203
Score = 31.5 bits (68), Expect = 1.9
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 475 EAYNTISTTTIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESV 534
E+Y + ST+T+A L+ + LE+ + + +L++ KEK +
Sbjct: 87 ESYASSSTSTVAQLQEQLHLKIFELEEQNAKRNEENHQSQSRIASLEKLVLFMKEKDPEL 146
Query: 535 STNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSS 594
+ TDST PE T TT S + T + I +TPL S + I+ +S
Sbjct: 147 AAYLSTDSTE---PEPET---HPTTTTPSTLPTPTTTAPAIIVAGTTPLVSTSATISNTS 200
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 30.7 bits (66), Expect = 3.4
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 456 TNPTHENIIRSTQLDTTINEAYNTISTTTIANLENDNEITTRALEKYPLGSSATKDFFWN 515
+N E I+ T + EA ++ +E DN + +EK+ A
Sbjct: 379 SNLLSEGIVLDVSSKTRLGEAIEK-ENPSLREVEIDN---SSPMEKFKFEIKACGTKKGE 434
Query: 516 TSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENI 575
S ++ + T K + + +T+ T+A + S+ S ++T ++F+ ++ENI
Sbjct: 435 GSLSVHDVTHLDKTPSKGLPQLNVTEKVTDASKDLSSRSSFAQSTLNTFVTMGKRKHENI 494
Query: 576 PAVIS-TPLSSVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLSNLVSTMEPAT--E 632
++S TP+ TSS++ EK+ K +A + + L ++V + E T E
Sbjct: 495 STILSETPVLRNQ----TSSYR-VEKS-KFEVRALASRCLVEGDQLDDMVISKEDMTPSE 548
Query: 633 YYTSNDNTQTPRTQ 646
+ N +P TQ
Sbjct: 549 RDSELGNRISPGTQ 562
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.7 bits (66), Expect = 3.4
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 499 LEKYPLGSSATKDFFWN---TSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSV 555
LEK + SS++ D + T P + K K ES S++ + S E +P K +V
Sbjct: 143 LEKAKVESSSSDDDSSSDEETVPVKKQPAVLEKAKIESSSSDDDSSSDEETVPMKKQTAV 202
Query: 556 QKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIATSSFQTTEKNIKLSTKAESEYVSY 615
++ +S + ++ P TP +PI + E S+ E+ V
Sbjct: 203 LEKAKAESSSSDDGSSSDEEP----TPAKK--EPIVVKKDSSDES----SSDEETPVVKK 252
Query: 616 KPTYLSNLVSTMEPATEYYTSNDNTQTP 643
KPT + ++E +S+D+ TP
Sbjct: 253 KPTTVVKDAKAESSSSEEESSSDDEPTP 280
>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
thaliana]
Length = 265
Score = 30.7 bits (66), Expect = 3.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 306 DKDVNMNKKRLSNAIKRLSTLGDSL--DDYITKQIRRDSRQSENSDINE 352
D+ ++ K+ AI L TLG+ D + Q+ RD+ NSDIN+
Sbjct: 192 DRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWNSDIND 240
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 30.3 bits (65), Expect = 4.4
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 450 IQWLDPTNPTHE---NIIRSTQLDTTINEAYNTISTTTIANLENDNEITTRALEKYPLGS 506
+ W + TNP H+ +I S + +N+ STT + N N +TT + S
Sbjct: 182 LSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQII-----S 236
Query: 507 SATKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKETTDDSFIA 566
+ +D N + + ES + P +T +P T V+KE D
Sbjct: 237 TRLEDKTKNLKTRAQSESLKRAKDNESAAKKPRV-TTPSPLP---TFKVRKENLRDQI-- 290
Query: 567 TTSLQ 571
TSLQ
Sbjct: 291 -TSLQ 294
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 30.3 bits (65), Expect = 4.4
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 450 IQWLDPTNPTHE---NIIRSTQLDTTINEAYNTISTTTIANLENDNEITTRALEKYPLGS 506
+ W + TNP H+ +I S + +N+ STT + N N +TT + S
Sbjct: 182 LSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQII-----S 236
Query: 507 SATKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKETTDDSFIA 566
+ +D N + + ES + P +T +P T V+KE D
Sbjct: 237 TRLEDKTKNLKTRAQSESLKRAKDNESAAKKPRV-TTPSPLP---TFKVRKENLRDQI-- 290
Query: 567 TTSLQ 571
TSLQ
Sbjct: 291 -TSLQ 294
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 30.3 bits (65), Expect = 4.4
Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
Query: 520 LDETTSHYKEKRESVSTNPLTDSTTEAIPEKSTLSVQKETTDDSFIATTSLQNENIPAVI 579
LD+ YK + S+ T S+++A PE++T +E T+ L ++ ++
Sbjct: 23 LDDLPPIYKRRSVWTSSEEDTVSSSDA-PEQATPFTAREETNADITRELDLPDDPELPLV 81
Query: 580 STPLSSVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLSNLVSTMEPATEYYTSNDN 639
+S D TS++Q + + K E +++ + P +++ E + + +
Sbjct: 82 RRSFASTADEAGTSNWQDVPEPFMPTVKIE-DFLCFGPNETEDILRLNE--QKAFEKAEK 138
Query: 640 TQTPRTQYLPITTSTDSVYTTAPTIVTTIAQFIETSAITSNV 681
+ R + + + S S T ++ A+F A+T V
Sbjct: 139 KKRKRNKKVIMPDSPGSTLCTERSLSDLRARF-SLGAVTLRV 179
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 5.9
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 484 TIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVSTNPLTDST 543
T N E++ ++ + L+ S + T+ ET K K +S ST P+ DS+
Sbjct: 481 TDMNFEDEADVARKVLKNLLASSKGS------TATPEGETEESDKSKLKSSSTKPVADSS 534
Query: 544 TEAIPEKS---TLSVQKETTD-DSFIATTSLQN 572
+ P KS + KET D D F T ++N
Sbjct: 535 GVSEPLKSGKTKVVAPKETQDNDDFERTLFIRN 567
>At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5)
identical to 14-3-3 protein GF14 upsilon GI:2232148 from
[Arabidopsis thaliana]
Length = 268
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 304 ASDKDVNMNKKRLSNAIKRLSTLGDS--LDDYITKQIRRDSRQSENSDINE 352
+SD+ ++ K+ AI L TLG+ D + Q+ RD+ SD+N+
Sbjct: 192 SSDRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLND 242
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,021,884
Number of Sequences: 28952
Number of extensions: 613844
Number of successful extensions: 1938
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1928
Number of HSP's gapped (non-prelim): 28
length of query: 687
length of database: 12,070,560
effective HSP length: 86
effective length of query: 601
effective length of database: 9,580,688
effective search space: 5757993488
effective search space used: 5757993488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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