Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001142-TA|BGIBMGA001142-PA|IPR006671|Cyclin, N-terminal,
IPR004367|Cyclin, C-terminal, IPR006670|Cyclin, IPR011028|Cyclin-like
         (511 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   2.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.8  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    23   3.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   5.1  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 134 KKSLEETKPDRSREEPPLRKALQEKKDA 161
           K+  EET P +    PPL + L+ ++DA
Sbjct: 51  KQDAEETVPVKKISIPPLGEILELERDA 78


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 175 ETKRQRTSYTRYQTLELEKEFHF 197


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 7   ETKRQRTSYTRYQTLELEKEFHF 29


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           E K++ T+Y  + T E +KE +F
Sbjct: 219 ETKRQRTSYTRYQTLELEKEFHF 241


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 93  EVEVKKRETTYKPFATKETKKESNFFVNA 121
           +V V+K+   Y  F T E +KE  F  NA
Sbjct: 240 QVTVRKKRKPYSKFQTLELEKE--FLFNA 266


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,877
Number of Sequences: 317
Number of extensions: 4669
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 511
length of database: 114,650
effective HSP length: 60
effective length of query: 451
effective length of database: 95,630
effective search space: 43129130
effective search space used: 43129130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)