Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001142-TA|BGIBMGA001142-PA|IPR006671|Cyclin, N-terminal,
IPR004367|Cyclin, C-terminal, IPR006670|Cyclin, IPR011028|Cyclin-like
         (511 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   8.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 19/77 (24%), Positives = 31/77 (40%)

Query: 112 KKESNFFVNAAENVRALCAQVEKKSLEETKPDRSREEPPLRKALQEKKDAVESPMSVVDA 171
           KKE NF V+   N    C   EK ++     ++ R +  L      + D ++S  S +  
Sbjct: 91  KKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKC 150

Query: 172 SILSMSISKNESQIIED 188
              S   S  E   +E+
Sbjct: 151 DKCSTYQSNGEEVCLEN 167


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 95  EVKKRETTYKPFATKETKKESNF 117
           EVK++ T+Y  + T E +KE +F
Sbjct: 7   EVKRQRTSYTRYQTLELEKEFHF 29


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 250 LVEVCDEYQQQSETLHLAVSYVDRFLSYMSVVRTKLQLVGTAATYIAAKYEEVY 303
           L +V D++ Q  +TL   ++ VDR +   +  +  LQ    A   +  KY E Y
Sbjct: 358 LSKVIDQHSQLIDTLENVLAIVDRLMDETN--QLTLQETADAFKDLQDKYYEEY 409


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 273 RFLSYMSVVRTKLQLVGTAATYIAAKYEEVYP 304
           R+L  ++ +RT+L      AT   ++ EE YP
Sbjct: 52  RYLEELNALRTELGASTKLATDTTSENEENYP 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,856
Number of Sequences: 429
Number of extensions: 5874
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 511
length of database: 140,377
effective HSP length: 61
effective length of query: 450
effective length of database: 114,208
effective search space: 51393600
effective search space used: 51393600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)