Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001141-TA|BGIBMGA001141-PA|IPR001660|Sterile alpha motif
SAM, IPR011510|Sterile alpha motif homology 2,
IPR002195|Dihydroorotase, IPR010993|Sterile alpha motif homology
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)                133   3e-31
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   3e-17
SB_12380| Best HMM Match : SAM_2 (HMM E-Value=1.6e-14)                 70   3e-12
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.024
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.098
SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         32   0.69 
SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)                 29   4.9  
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      29   8.5  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         29   8.5  

>SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)
          Length = 257

 Score =  133 bits (321), Expect = 3e-31
 Identities = 79/210 (37%), Positives = 102/210 (48%), Gaps = 8/210 (3%)

Query: 166 WLEDVGVCXXXXXXXXXXXXXXXXHRLTXXXXXXXXXXXXXXXXXSIRRGIQVLRDNKFN 225
           WLED+G+                 + LT                 SI+R IQ LR   F+
Sbjct: 2   WLEDIGLPHYKDAFSDACVDGRMLNHLTLDDLQHLKVTNALHHV-SIQRAIQCLRFYNFH 60

Query: 226 PDTMIRRXXXXXXXXXXXXXXXXXXXXRWSSHRVMQWLKEIDLAEYAPNLRGAGVHGGLM 285
           P+ + R                      W++ RVM+WL+ +DLAEYAPNLRG+GVHG LM
Sbjct: 61  PNCLKRYPIDESWQQGADVLL-------WTNGRVMEWLRLVDLAEYAPNLRGSGVHGALM 113

Query: 286 LLEPRFTAELLAALLNIPANKTLLRRHLTQRFNDLLGRDVIQQKRNAEQTLGYQPLTATT 345
           +LEPRFT E LAALL+IP+ KTLLRRHL   F  L+G    + K  A    G+ PL    
Sbjct: 114 ILEPRFTPETLAALLSIPSTKTLLRRHLASHFQSLVGTACSRTKDEAAADPGFTPLMPGV 173

Query: 346 KYKVPKKSQFXXXXXXXXXXXXIGELVCPL 375
           K+KV KKS+             +   VCP+
Sbjct: 174 KHKVMKKSKSLGALRKKSKDSDMDNYVCPM 203


>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 81/318 (25%), Positives = 129/318 (40%), Gaps = 17/318 (5%)

Query: 4   KYPAPYDHNMPSEFEKEEAIPRGSPSPSLREVRSRLGSGSVRLEGDEFSRSSLRASSTPR 63
           +Y  P  +N+  E +  +   RGS S    + R+R        E DE  +  L  S + +
Sbjct: 408 EYVTPVLNNV-EEKKSRKKDKRGSLSRLFSKGRNRKSVTKQTYE-DEIEQYILGTSYSSK 465

Query: 64  QKQQTMPWQTTDIRQWDCETTCGWLE-SIGMEQYAPAARAWLGAGDARGVLANASHSTIE 122
           Q       +   +  W       WLE    M  YA      + +G    VL + S + +E
Sbjct: 466 Q-HIFEAHKDVPMACWKANMVLAWLEVECHMPMYAQMCYENVKSGR---VLLDLSDAELE 521

Query: 123 KELAIKHPMHKKKILLAIMDLLGSHGDELLTAAGALSGAWVLR-WLEDVGVCXXXXXXXX 181
             L I + MH++K+ LAI +       +       +   WV R W+ D+G+         
Sbjct: 522 SGLGISNVMHRRKLRLAIEEYRDPSSVK-YPYMSKIDHFWVARTWIRDLGLSQYGPAFES 580

Query: 182 XXXXXXXXHRLTXXXXXXXXXXXXXXXXXSIRRGIQVLRDNKFNPDTMIRRXXXXXXXXX 241
                   + LT                 SI  G+ +LR   F+   +I R         
Sbjct: 581 QMIDGRLLNVLTRKDMEKHLHISKKFHQTSILNGVDLLRLIAFDKQCLIDRRLSCDETDI 640

Query: 242 XXXXXXXXXXXRWSSHRVMQWLKEIDLAEYAPNLRGAGVHGGLMLLEPRFTAELLAALLN 301
                       W++ +VM+W + IDL EYA NLR +GVHG +M++   F  + +A  L 
Sbjct: 641 DPVV--------WTNDKVMRWCRSIDLQEYADNLRDSGVHGAMMVINETFGPDEMANCLA 692

Query: 302 IPANKTLLRRHLTQRFND 319
           I  +K ++RRHLT+  +D
Sbjct: 693 IHPSKNIIRRHLTRDVDD 710


>SB_12380| Best HMM Match : SAM_2 (HMM E-Value=1.6e-14)
          Length = 218

 Score = 70.1 bits (164), Expect = 3e-12
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 162 WVLR-WLEDVGVCXXXXXXXXXXXXXXXXHRLTXXXXXXXXXXXXXXXXXSIRRGIQVLR 220
           WV R W+ D+G+                 + LT                 SI  G+ +LR
Sbjct: 13  WVARTWIRDLGLSQYGPAFESQMIDGRLLNVLTRKDMEKHLHISKKFHQTSILNGVDLLR 72

Query: 221 DNKFNPDTMIRRXXXXXXXXXXXXXXXXXXXXRWSSHRVMQWLKEIDLAEYAPNLRGAGV 280
              F+   +I R                     W++ +VM+W + IDL EYA NLR +GV
Sbjct: 73  LIAFDKQCLIDRRLSCDETDIDPVV--------WTNDKVMRWCRSIDLQEYADNLRDSGV 124

Query: 281 HGGLMLLEPRFTAELLAALLNIPANKTLLRRHLTQRFNDLL 321
           HG +M++   F  + +A  L I  +K ++RRHLT     L+
Sbjct: 125 HGAMMVINETFGPDEMANCLAIHPSKNIIRRHLTSEMTALI 165



 Score = 31.1 bits (67), Expect = 1.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 87  WLESIGMEQYAPAARAWLGAGDARGVLANASHSTIEKELAIKHPMHKKKILLAIMDLL 144
           W+  +G+ QY PA  + +  G    VL   +   +EK L I    H+  IL  + DLL
Sbjct: 18  WIRDLGLSQYGPAFESQMIDGRLLNVL---TRKDMEKHLHISKKFHQTSILNGV-DLL 71


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 37.1 bits (82), Expect = 0.024
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 76   IRQWDCETTCGWLESIGMEQYAPAARAWLGAGDARGVLANASHSTIEKELAIKHPMHK 133
            + +W C+  C WLES+G  QY    R      D +G           KEL +K   H+
Sbjct: 1858 LTEWSCDDVCSWLESLGFHQYVETFR----ENDIQGCHLPELSKAEMKELGVKSLGHR 1911


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 47  EGDEFSRSSLRAS--STPRQKQQTMPWQTTDIRQWDCETTCGWLESIGMEQYAPAARAWL 104
           EGD +S      S  ++P + ++ MP+    +  W  E    WL+ +G+  +    +A  
Sbjct: 750 EGDVYSEEFQGTSQVASPSKPKKLMPFHKIPLGDWTEEDAREWLDFVGLGHFREQFKAHH 809

Query: 105 GAGDARGVLANASHSTIEKELAIKHPMHKKKILLAIMDLLGSHGDELL 152
             G     L N +   +E E+ I  P  ++ +L  I DL     DE L
Sbjct: 810 VNG---RTLKNINFQLLE-EIGINSPDEREIVLSEIYDLDNPSDDEEL 853


>SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 79  WDCETTCGWLESIGMEQYAPAAR 101
           W  E  C WLESIG+ QY+   R
Sbjct: 326 WTVEEVCTWLESIGLAQYSEVFR 348


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 79  WDCETTCGWLESIGMEQYAPAAR 101
           W  E  C WLESIG+ QY+   R
Sbjct: 608 WTVEEVCTWLESIGLAQYSEVFR 630


>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 70  PWQTTDIRQWDCETTCGWLESIGMEQYA 97
           P + TD+  WD      W+ ++G+E+Y+
Sbjct: 417 PSKKTDVSDWDVNQVVTWMNNLGLEEYS 444


>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 67  QTMPWQTTDIRQWDCETTCGWLESIGMEQYAPAARAWL 104
           +T  W  ++ R W    TCGWL S    +     R WL
Sbjct: 740 ETRGWLPSETRGWLPSETCGWLPSETHGRLPSETRGWL 777



 Score = 29.9 bits (64), Expect = 3.7
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 67  QTMPWQTTDIRQWDCETTCGWLESIGMEQYAPAARAWLGAGDARGVLANASHSTIEKE 124
           +T  W  ++ ++W    T GWL S   E      R WL   + RG L + +   +  E
Sbjct: 668 ETRGWLPSETQEWLPSETHGWLPSETHEWLPSETRGWL-PSETRGWLPSETQEWLPSE 724


>SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)
          Length = 334

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 322 GRDVIQQKRNAEQTLGYQPLTATTKYKVPKK 352
           GR+V Q    A  + GY+P T  T YK+ KK
Sbjct: 257 GREVPQGAEQATTSAGYKPTTLPTLYKMFKK 287


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 86  GWLESIGMEQYAPAARAWLGAGDA---RGVLANASHSTIEKELAIKHPMHKKKILL-AIM 141
           GW +S+   + A  A A   + D    R  L N + +T+  ++ ++H  H  K+ + A++
Sbjct: 44  GWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVL 103

Query: 142 DLLGSHGDELLTAAGALSGAWVLRWLEDVGVC 173
            L GS     +     L G  V  +L++   C
Sbjct: 104 RLKGSGDLNAIQIIKKLGGGMVDSFLDEGDRC 135


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 12  NMPSEFEKEEAIPRGSP-SPSLREVRSRLGSGSVRLEGDEFSRSSLRASSTPRQKQQTMP 70
           N PS    ++  P G P SP L+ V+   G G  +    E   +SL AS  P    +   
Sbjct: 412 NSPSLMNDDDP-PYGEPISPKLKGVKPERGRGKPKAPMAEAKGTSLTASMVPYNFSKPFT 470

Query: 71  W 71
           W
Sbjct: 471 W 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,361
Number of Sequences: 59808
Number of extensions: 374336
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 28
length of query: 391
length of database: 16,821,457
effective HSP length: 84
effective length of query: 307
effective length of database: 11,797,585
effective search space: 3621858595
effective search space used: 3621858595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)