GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001141-TA|BGIBMGA001141-PA|IPR001660|Sterile alpha motif
SAM, IPR011510|Sterile alpha motif homology 2,
IPR002195|Dihydroorotase, IPR010993|Sterile alpha motif homology
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    32   0.16 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    29   1.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   6.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   7.9  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 101 RAWLGAGDARGVLANASHSTIEKELAIKHPMHKKKI 136
           R++L   D+ G L++AS S +++E ++  P HKK++
Sbjct: 285 RSFLNIWDSGGELSDASSSDLDEEFSLFIPRHKKRV 320


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 254 WSSHRVMQWLKEIDLAEYAPNLRGAGVHGGLML 286
           WS+  V++WL    L   APN     + G ++L
Sbjct: 250 WSTEEVVEWLMNAGLGSVAPNFAENEITGEILL 282


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 9   YDHNMPSEFEKEEAIPRGSPSPSLREVRSRL-GSGSVRLEG-DEFSRSSLRASSTPRQKQ 66
           YD  +PS+F K++ + + SP PSL    +++  SGS      D  S++SL  +S  +   
Sbjct: 363 YDTIVPSQFYKQKVV-QNSP-PSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSST 420

Query: 67  QTMPWQTT 74
              P  TT
Sbjct: 421 PRKPLPTT 428


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 54  SSLRASSTPRQKQQTMPWQTTDIRQWD 80
           S  +  STP +K +   W  T++++WD
Sbjct: 913 SKWKTVSTPSEKLRKPTWNGTNLQKWD 939


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,159
Number of Sequences: 5004
Number of extensions: 50745
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 5
length of query: 391
length of database: 2,362,478
effective HSP length: 74
effective length of query: 317
effective length of database: 1,992,182
effective search space: 631521694
effective search space used: 631521694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)