GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001141-TA|BGIBMGA001141-PA|IPR001660|Sterile alpha motif
SAM, IPR011510|Sterile alpha motif homology 2,
IPR002195|Dihydroorotase, IPR010993|Sterile alpha motif homology
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324...    32   0.91 
05_03_0368 - 13127536-13128429                                         31   1.2  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    31   1.2  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     30   2.8  
03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940     30   2.8  
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621...    29   4.8  

>05_07_0293 +
           29031318-29031812,29032096-29032158,29032365-29032490,
           29032783-29032911,29033161-29033311,29033853-29033962,
           29034502-29034607,29034697-29034894,29034988-29035030,
           29035129-29035207
          Length = 499

 Score = 31.9 bits (69), Expect = 0.91
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 112 VLANASHSTIEKELAIKHPMHKKKILLAIMDLLGSHGDELL 152
           +L +  H    +E+AIK+ +H+K +L  I+D L  + D++L
Sbjct: 458 ILDSDGHIRRTREIAIKYRLHRKLLLQKIIDALDIYQDKIL 498


>05_03_0368 - 13127536-13128429
          Length = 297

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 82  ETTCGWLESIGMEQYAPAARAWLGAGDARGVLANASHSTIEKELAIKHPMHKKKILLAIM 141
           +T C W  +IG + YAPA R+   A  +  V A A+ ++   E    +     + LL I+
Sbjct: 23  QTHCIWQSAIGYDPYAPAERSKHQAPSSSSVSAAAAAASAPSE----NTYTSYQSLLTII 78

Query: 142 DLLGSHGDE 150
              GS  DE
Sbjct: 79  RATGSTSDE 87


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 96   YAPAARAWLGAGDARGVLANASHSTIEKELAIKHPMHKKKILLAIMDLLGSHGDELLTA 154
            Y+ A    L A   + V      S  EK+L ++H +H+ + L A   LLG    +L +A
Sbjct: 1468 YSEANALSLEASIQKSVEEELYSSLEEKDLRVEHHLHRGRALAAFRHLLGKRASQLKSA 1526


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 11  HNMPSEFEKEEAI---PRGSPSPSLREVRSRLGSGSVRLEGDEFSRSSLRASST 61
           HN P + EK+  +   P   P PS R  RS   +GS +     F+R + R+++T
Sbjct: 273 HNPPCQEEKKSGMAPPPSPPPRPSHRRARSMSITGSAKSVRFPFTRQASRSTTT 326


>03_04_0071 +
          17048222-17048227,17048348-17048601,17048679-17048940
          Length = 173

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 15 SEFEKEEAIPRGSPSPSLREVRSRLGSGSVR-LEGDEFSRSSLRASSTPRQKQQTMP 70
          S   K+ A+PR SP P L++  SR  +G+++  E   FS S+   +   R ++  +P
Sbjct: 31 SSIPKQAAVPRISPRPPLQDA-SRTPAGNIKNTENTSFSSSTPIRTRLHRHRRLPLP 86


>01_05_0659 -
           24061318-24061575,24061664-24061918,24062001-24062172,
           24062258-24062381,24062442-24062485,24063601-24063734,
           24063822-24063905,24064100-24064390,24064713-24065045,
           24065145-24065389,24065644-24065910,24065997-24066157,
           24066253-24066569,24066665-24066946,24067024-24067325,
           24067398-24067488,24067796-24067849,24067963-24068039,
           24068159-24068318,24068653-24068737,24069029-24069238,
           24069344-24069732
          Length = 1444

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/71 (22%), Positives = 36/71 (50%)

Query: 1   MALKYPAPYDHNMPSEFEKEEAIPRGSPSPSLREVRSRLGSGSVRLEGDEFSRSSLRASS 60
           +AL Y  PY  + PS  E+E    + + + ++ +V +   S ++ +  +  + S +  +S
Sbjct: 792 LALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNS 851

Query: 61  TPRQKQQTMPW 71
            P Q+   +P+
Sbjct: 852 QPTQRGMVLPF 862


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,214
Number of Sequences: 37544
Number of extensions: 380708
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 6
length of query: 391
length of database: 14,793,348
effective HSP length: 83
effective length of query: 308
effective length of database: 11,677,196
effective search space: 3596576368
effective search space used: 3596576368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)