GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001141-TA|BGIBMGA001141-PA|IPR001660|Sterile alpha motif
SAM, IPR011510|Sterile alpha motif homology 2,
IPR002195|Dihydroorotase, IPR010993|Sterile alpha motif homology
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07170.1 68416.m00854 sterile alpha motif (SAM) domain-contai...    30   3.1  
At5g47970.1 68418.m05926 nitrogen regulation family protein stro...    29   7.1  
At1g07120.1 68414.m00757 expressed protein                             28   9.3  

>At3g07170.1 68416.m00854 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 203

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 50  EFSRSSLRASSTPRQKQQTMPWQTTDIRQWDCETTCGWLESIGMEQYAPAARAWLGAGDA 109
           E +R S+++ +T  + ++T    T    Q    +   +LES+G+E+Y+ A +      DA
Sbjct: 114 EAARPSMKSVATETETRKTSSQATRKKSQQADSSVDSFLESLGLEKYSTAFQVEEVDMDA 173

Query: 110 RGVLANASHSTIEKELAIKHPM-HKKKILLAI 140
                   H T +   A+  PM  +KKILLA+
Sbjct: 174 ------LMHMTDDDLKAMLIPMGPRKKILLAL 199


>At5g47970.1 68418.m05926 nitrogen regulation family protein strong
           similarity to unknown protein (emb|CAB87804.1) ;
           contains Pfam domain PF01207: Dihydrouridine synthase
           (Dus); similar to (SP:P45672) NIFR3-like protein
           (SP:P45672) [Azospirillum brasilense]
          Length = 387

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 272 APNLRGAGVHGGLMLLEPRFTAELLAAL 299
           +P + G G  G L++L+P+F  E ++ +
Sbjct: 103 SPKVSGRGCFGALLMLDPKFVGEAMSVI 130


>At1g07120.1 68414.m00757 expressed protein
          Length = 392

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 7   APYDHNMPSEFEKEEAIPRGSPSPSLREVRSRLGSGSVRLEGDEFSRSSLRASSTPRQKQ 66
           A  ++  P     E    + +P  SL +   R+ S   RLE    +   +R S+  R K 
Sbjct: 247 AACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDRLEESVNNTEKMRDSTGKRYKD 306

Query: 67  QTMPWQ 72
             +PW+
Sbjct: 307 FQIPWE 312


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,787
Number of Sequences: 28952
Number of extensions: 279719
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 3
length of query: 391
length of database: 12,070,560
effective HSP length: 82
effective length of query: 309
effective length of database: 9,696,496
effective search space: 2996217264
effective search space used: 2996217264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)