Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.94 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    30   0.94 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    29   1.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   2.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   2.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   6.6  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 378 LERALHEA-KQRLDDAEQKLQKEMLQRSSLETQKLELLSK 416
           LE+   EA +QRL D E++ +KE++++   E +++ L+ +
Sbjct: 118 LEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEE 157


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 20  NRTAGEKPPIPIKSRANTES-KHSQLEKEISEKQSRRASGGSERPLSTASETSERD 74
           +  A E+P + IKS ++TES +  +   EI EKQ +      + P+ T +  +  D
Sbjct: 73  DENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLEPKTPVQTNTNNNHLD 128


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 14  TIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASETSER 73
           TIAA H+   G K  +   S  + E     ++KE ++KQ      G ER L  ++++ E 
Sbjct: 207 TIAAFHD-VNGNKDAV---SNESDEDGDFLVKKEKTKKQLEEEEHGYERFLLESAQSKEA 262

Query: 74  DSAXXXXXXXXXXQEMSFLLSPMSDCEYLTEPFDED 109
                        Q  S L++   D E   +P DED
Sbjct: 263 RKVLEDLSSSYVKQRPSVLVNTEDD-ENGIKPSDED 297


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERAL---HEAKQRLDDAEQKLQKEM 400
           E+ +  L+ +K              S   EK+ DLE++L     +K  LD++ + LQ E 
Sbjct: 694 EEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQ-EQ 752

Query: 401 LQRSSLETQKL 411
           L    +E Q +
Sbjct: 753 LASKKIEVQNV 763


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 371 QTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
           Q +K  +LER   E KQ+  + E+KL+K   Q+   + +K+    +L E
Sbjct: 650 QEKKQQELERQKREEKQKQKEREKKLKK---QQQEADREKMAREQRLRE 695


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/82 (19%), Positives = 31/82 (37%)

Query: 22  TAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASETSERDSAXXXXX 81
           T+    P+   S AN+ +  S     +S   S  A+  S  PL++ + T+   ++     
Sbjct: 317 TSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLT 376

Query: 82  XXXXXQEMSFLLSPMSDCEYLT 103
                   S   +P++     T
Sbjct: 377 SVNSTSATSASSTPLTSANSTT 398


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,880
Number of Sequences: 5004
Number of extensions: 80073
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 10
length of query: 540
length of database: 2,362,478
effective HSP length: 76
effective length of query: 464
effective length of database: 1,982,174
effective search space: 919728736
effective search space used: 919728736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)