Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1500 + 30602846-30603185,30603244-30603323,30603477-306035... 36 0.11
11_01_0385 + 2915532-2916482 32 1.0
01_05_0513 - 22864657-22867899 32 1.0
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 31 2.3
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 31 3.1
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 31 3.1
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 4.1
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 4.1
02_05_0819 - 32014236-32016059 30 5.4
02_05_0771 - 31628535-31629133,31629223-31629987,31630808-316309... 30 5.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 5.4
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 29 7.1
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 9.4
05_01_0488 - 4070506-4072277,4072455-4072557 29 9.4
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 29 9.4
>06_03_1500 +
30602846-30603185,30603244-30603323,30603477-30603566,
30603677-30603909,30604126-30604204,30604320-30604464,
30604815-30604877,30605343-30605374,30605475-30605516,
30605599-30605712
Length = 405
Score = 35.5 bits (78), Expect = 0.11
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 10 LVAATIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASE 69
LV AT++++ + +K P K RA+ E KH +K Q RR + + + S
Sbjct: 306 LVQATLSSMFKKAEEKKGPAAKKQRASPEEKHPTGKKSAGRSQKRRKTQVEDDKIEVLSS 365
Query: 70 TSE 72
+S+
Sbjct: 366 SSQ 368
>11_01_0385 + 2915532-2916482
Length = 316
Score = 32.3 bits (70), Expect = 1.0
Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 260 PQHPTGVR-ASPRPRRIRNEETPPDLHRRWNSYEHFRWPE-GGWWPPMCWCHGPPIPPPC 317
P H G A PRP + PP +N WP G WPP+ H PP P
Sbjct: 161 PHHGGGENPAWPRPGNNQWPPLPP-----FNQPPTPEWPHPGNKWPPLPPFHPPPTPAWP 215
Query: 318 CMHDRSWPSHPSLP 331
WP P P
Sbjct: 216 HPGGNKWPPLPPFP 229
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 260 PQHPTGVRASPRPRRIRNEETPPDLHRRWNSYEHFRWPE-GGWWPPMCWCHGPPIPP 315
P HP A P P + PP ++ WP G WPP+ HG +PP
Sbjct: 252 PSHPPPTPAWPHP----GNQWPPLPPFPFHPPPMPAWPHPGNQWPPLPPFHGSDVPP 304
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 32.3 bits (70), Expect = 1.0
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 259 PPQHPTGVRASP-RPRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGP--PIPP 315
P + V+ P P I EE PP +H H P G PP HGP P+ P
Sbjct: 199 PTEAAVEVQQPPVHPPVIIVEEAPPPMHHPMMPPMH--GPHGPMMPPAV--HGPHGPMAP 254
Query: 316 PCCMHDRSWPSHPSLPQTTVRGG 338
P H P P+ GG
Sbjct: 255 PMHQHQHPQPQPEPEPEPEPDGG 277
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 31.1 bits (67), Expect = 2.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 368 ISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
IS+ E++ DL + L ++K+Q+EM R LE + L L L++
Sbjct: 554 ISSLEERIADLISEKELVYEELKSTQEKMQQEMRHRQGLEDEILRLKQSLAD 605
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 30.7 bits (66), Expect = 3.1
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 343 AEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQ 402
+ED V + + + + EK+ D A A Q +DDAE+K + +
Sbjct: 697 SEDNVEEKKETEGTSVKEMNSILKADNVEEEKLTDDTSAERNAMQHIDDAEKKQAADTVS 756
Query: 403 RSSLETQKLE 412
R + Q +E
Sbjct: 757 RETSALQNIE 766
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 30.7 bits (66), Expect = 3.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 312 PIPPPCCMHDRSWPSHPSLPQTT 334
P PPP C RSWP P P+ +
Sbjct: 52 PPPPPLCRRRRSWPPPPPPPRVS 74
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 342 DAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQ-------RLDDAEQ 394
+ E +V+ L A + +++ +K +DLE+ L +A + R+D+
Sbjct: 801 ELETQVQELSAAEQSLKSHLTEFESKLASAEKKSMDLEQELKDATEECNSSRLRVDELSG 860
Query: 395 KLQKEMLQRSSLETQKLELLSKLSEV 420
+L++ +R+SLE LE K +E+
Sbjct: 861 ELEEYKEKRTSLEASLLEAKQKEAEL 886
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 19 HNRTAGEKPPI--PIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASETSER 73
H+++A E+ + P KS+ + K+ + +E +++ RR ERP + E ER
Sbjct: 1523 HDKSASEEQILSRPEKSKEKADDKYDRDPREKADRTERRRGEDIERPTDKSLERRER 1579
>02_05_0819 - 32014236-32016059
Length = 607
Score = 29.9 bits (64), Expect = 5.4
Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 7/154 (4%)
Query: 258 KPPQHPTGVRASPRPRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPC 317
KP Q + + R IR E D ++H R P PP+ H PP P
Sbjct: 196 KPSQQSAAFNSGAKERIIRMSEMAQDPLEP-PKFKHKRVPRASGSPPVPVMHSPP-RPVT 253
Query: 318 CMHDRSWPSHPSLPQTTVRGGFKNDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVD 377
+ W P + G+ + +RL AD + +E +
Sbjct: 254 VKDQQDWKIPPCISNWKNPKGYTIPLD---KRLAAD--GRGLQEVQINDNFAKLSEALYV 308
Query: 378 LERALHEAKQRLDDAEQKLQKEMLQRSSLETQKL 411
E+ EA Q +++LQ + +R E + L
Sbjct: 309 AEQKAREAVQMRSKVQRELQLKEKERKEQELRAL 342
>02_05_0771 -
31628535-31629133,31629223-31629987,31630808-31630905,
31631024-31631193,31631297-31631596,31632208-31632618
Length = 780
Score = 29.9 bits (64), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 465 NTHMYSSLPRSSVLASEARVAFGNKHSMVVARGRGHSVPNLGLYRYHTPSRGFETPISDP 524
N H++ + V+ +EAR + N A G PN+ ++R RG ETP DP
Sbjct: 128 NPHLWYRI--GQVIGTEARAVYNNGQ----AEGLTFWAPNINVFRDPRWGRGQETPGEDP 181
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 5.4
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 340 KNDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKE 399
KN A +V++LEA+ +SA + +L + +++L++A KLQ E
Sbjct: 833 KNAALLQVQQLEANLKNLESELEQKQSQVSALEQANEELREKISSLERQLEEARSKLQDE 892
Query: 400 MLQRSSLETQKLELLSK 416
+++ + + L+ L +
Sbjct: 893 IIKLQGEKERALDNLQQ 909
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 373 EKMVDLERALHEAKQRLDDAEQ---KLQKEMLQRSSLETQKLELLSKLSE 419
E+M L+++LH+A D A Q +L++ +L + + +K++ SKL E
Sbjct: 323 EEMASLKKSLHDASYERDKAVQDLARLKQHLLDKDLEDQEKMDEDSKLIE 372
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 368 ISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQK 410
+ + T ++ +L+ +L KQR DD E+K +E Q+++ E QK
Sbjct: 1515 VDSLTAEVEELKTSLQSEKQRADDLEKKRSEE--QQANEEKQK 1555
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 370 AQTEKMVDLERALHEAKQRLDDAEQK 395
A ++K+++LE LHE + +LD +E+K
Sbjct: 177 ALSQKIIELEDELHEVRGKLDASEEK 202
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 29.1 bits (62), Expect = 9.4
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 12 AATIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASETS 71
AA ++ + + T +PP P SR T+ K LEK+ S K++ ++ G+ AS++S
Sbjct: 1722 AAIVSWVGDLTQAFQPPKPSPSRQYTQRK--ILEKKQSTKEAEMSNDGTLSSSPLASQSS 1779
Query: 72 E 72
+
Sbjct: 1780 D 1780
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,649
Number of Sequences: 37544
Number of extensions: 639516
Number of successful extensions: 1691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 27
length of query: 540
length of database: 14,793,348
effective HSP length: 86
effective length of query: 454
effective length of database: 11,564,564
effective search space: 5250312056
effective search space used: 5250312056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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