Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26243| Best HMM Match : ACN9 (HMM E-Value=0.87) 50 5e-06
SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.33
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 34 0.33
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 32 1.3
SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1) 31 1.8
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16) 31 1.8
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17) 31 3.1
SB_45938| Best HMM Match : Troponin (HMM E-Value=1) 31 3.1
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34) 30 5.4
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 29 7.1
SB_12079| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-13) 29 7.1
SB_8265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 29 7.1
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_19362| Best HMM Match : M (HMM E-Value=0.0014) 29 9.4
>SB_26243| Best HMM Match : ACN9 (HMM E-Value=0.87)
Length = 344
Score = 50.0 bits (114), Expect = 5e-06
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 346 RVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSS 405
++ RLE +K + AQ EKM DLE L E K R +D EQ+L+KE L+ S
Sbjct: 104 QIDRLEDEKDSLILQVSVLTDQVEAQGEKMRDLEFTLEEQKIRAEDLEQQLEKEKLRVSQ 163
Query: 406 LETQKLELLSKL 417
+K LLS++
Sbjct: 164 SAKEKQNLLSEI 175
>SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 33.9 bits (74), Expect = 0.33
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 379 ERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
E+ L E +QR ++ EQ+L++E Q++ LE + +L ++L E
Sbjct: 235 EQQLEEQRQRCNELEQQLEQERQQKAELEMRTEQLSTQLQE 275
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 33.9 bits (74), Expect = 0.33
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 342 DAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEML 401
D +++++ + A E+ D+ER + K R+D E+++++
Sbjct: 985 DINEKIKKYQKAADEAKRDLVAANVAADAAREEKRDMERKFNSLKDRIDALEKEIKELKA 1044
Query: 402 QRSSLETQKLELLSKLS 418
QR++LET+ KL+
Sbjct: 1045 QRNNLETELSNKSHKLA 1061
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 16 AALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASET 70
A H+R++ E PP+ ++ A K + +E Q R + +E+P ++ ET
Sbjct: 71 AEKHHRSSKETPPVQPRNLAGPAEKPHRSRRETQLAQPRNPTSPAEKPHQSSKET 125
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 NRTAGEKPPI-PIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASET 70
+R + E PP+ P ++ KH + KE Q R +G +E+P + ET
Sbjct: 52 HRPSRETPPVQPRRNPTCPAEKHHRSSKETPPVQPRNLAGPAEKPHRSRRET 103
>SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 14 TIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASETSER 73
T+A + G PP P K A+ +K LE+ + + ++ S +RP T R
Sbjct: 66 TVAVYQRQLFGPPPPPPPKGHADHSAKGGPLEQPVKGQVIQKCSISGKRPAVTTFVGKAR 125
Query: 74 DS 75
+S
Sbjct: 126 ES 127
>SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1)
Length = 838
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 11 VAATIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASGGSERPLSTASET 70
+ TI A+H+ AG PP+ +K + + Q K+ S K S +GG + T S T
Sbjct: 657 INGTIVAVHSDRAGAPPPLIVKKPKHVDDS-VQAGKKASSKTS---NGGKLKSSQTESFT 712
Query: 71 SERD 74
S R+
Sbjct: 713 SVRN 716
>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
Length = 458
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 336 RGGFKNDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQK 395
R K + R+E K EK+ LE AL E ++R + EQ+
Sbjct: 289 RDALKEELNQTRYRMEQVKTDLQDAEQHQQAEADIAQEKVEGLESALDEERKRREACEQE 348
Query: 396 LQKEM----LQRSSLETQKLELLSKLSE 419
+++ M +S L+ K L++++ E
Sbjct: 349 IRQHMEDLRFSQSELQRSKTSLMNQIQE 376
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 14 TIAALHNRTAGEKPPIPIKSRA---NTESKHSQLEKEISEKQSRRASGGSER 62
++ LHN T EK + K +A +T+S+H L +E+ + S R ER
Sbjct: 1407 SVRQLHNETVEEKGKLEAKIQAYKISTQSEHEVLAEEVYTRYSSRTRASIER 1458
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
+ ++LE L+ A +R+ + E++L+K+ Q SSLE+ E LS++ E
Sbjct: 1302 RQLELESKLNAANKRISNLEERLEKK--QMSSLESS--EQLSQIIE 1343
>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
Length = 339
Score = 30.7 bits (66), Expect = 3.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 96 MSDCEYLTEPFDEDQERATAGFMHPAVRSYMYSPMGGDSDSPDEATVKCTVWSDGATGDA 155
MS+ E +P D+D+ T G++ PA +++ + D+ DEA VK G T +
Sbjct: 1 MSEAEANLKPLDDDEPEETPGYVPPAQKTWEEIQ---NLDADDEALVKYKQTLLGVTPEE 57
Query: 156 RP 157
P
Sbjct: 58 LP 59
>SB_45938| Best HMM Match : Troponin (HMM E-Value=1)
Length = 185
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLS-KLSE 419
K+ D+++ L +QR+++ E +L + ++ S++ Q++ELLS LSE
Sbjct: 87 KVKDIKKKLSNERQRVEELEDELTSKKFEKDSIK-QEVELLSATLSE 132
>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
Length = 337
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 379 ERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELL 414
E+AL ++ L D E+K +K M+ + L+ +K LL
Sbjct: 81 EKALRSVQESLHDLEEKYRKNMVSIAQLDNEKQALL 116
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 29.9 bits (64), Expect = 5.4
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 373 EKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLEL 413
+++ DL+R L+EA+ ++ A++K+Q +R +E + +L
Sbjct: 1750 KQIADLQRKLNEAESKIRTADEKVQDAENERDDMEHRNKQL 1790
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 303 PPMCWCHGPPIPPPCCMHDRSWPSHPSL 330
P MC P P CC + WP+ P+L
Sbjct: 448 PSMC---APSCTPACCAEQQCWPNQPAL 472
>SB_12079| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-13)
Length = 420
Score = 29.5 bits (63), Expect = 7.1
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 372 TEKMVDLERALHEAKQRLDDAEQKLQKEML---QRSSLETQKLELL-SKLSEV 420
TE++ L+R+L E +Q L++ KLQ++ L +R S+E ++ +L KL+E+
Sbjct: 7 TEEVKVLQRSLSEKEQLLEERTFKLQQQALFWEERLSIEKEEKKLCEEKLAEL 59
>SB_8265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 29.5 bits (63), Expect = 7.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 187 RTLTPNRRLDNSTRRDDDFKWM 208
R L NRRLDNS R D++ +W+
Sbjct: 44 RRLDNNRRLDNSRRLDNNSRWI 65
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 29.5 bits (63), Expect = 7.1
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 9 SLVAATIAALHNRTAGEKPPIPIKSRANTESKHSQLEKEISEKQSRRASG--GSERPLST 66
+L +T H R ++ + R NTE+ + K + +K+ R S G+E+PL +
Sbjct: 609 ALPPSTAEVTHQRILDQQDNV--NERRNTETLEKKPSKSVKKKRRREGSSKEGTEKPLES 666
Query: 67 ASETSERDSAXXXXXXXXXXQEMSFLLSPMSDCEYLT 103
+ T +++ LL M E T
Sbjct: 667 FASTQSSVKFADIGGCSNTLEQVGKLLVHMCHPEVFT 703
>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 29.5 bits (63), Expect = 7.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 377 DLERALHEAKQRLDDAEQKLQKEMLQR-SSLETQKLELLSKLSEV 420
+L +AL E + L +KLQ+E QR LE +K EL +L +
Sbjct: 83 ELGKALLEKNEELSQKYEKLQEEFSQRVEQLEQEKHELKLRLERI 127
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/51 (23%), Positives = 32/51 (62%)
Query: 370 AQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSEV 420
++ +++ +LE L E ++ + + E+KL+++ + L+ + +EL KL ++
Sbjct: 608 SRDDEITELENELEEQREIIKENEEKLKEKEKEIEKLKKKIIELSDKLKDM 658
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 258 KPPQHPTGVRASPRPRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPP 312
+P Q P GV SP+P + + P + +S P G PP W + PP
Sbjct: 2790 QPLQRPEGVAPSPKPE--KPQRKPRARAKSKDSLTPQASPLPGQGPPADWMNSPP 2842
>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
Length = 722
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 378 LERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLE 412
LE +++ K +LDDAE +L + +R+S+++ +LE
Sbjct: 571 LEDTVNKTKAKLDDAESEL-RNARERNSIQSMRLE 604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,522,020
Number of Sequences: 59808
Number of extensions: 656297
Number of successful extensions: 1821
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1779
Number of HSP's gapped (non-prelim): 55
length of query: 540
length of database: 16,821,457
effective HSP length: 86
effective length of query: 454
effective length of database: 11,677,969
effective search space: 5301797926
effective search space used: 5301797926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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