GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
         (540 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    29   0.42 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    26   2.9  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   3.9  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   5.1  
AY095933-1|AAM34435.1|  505|Anopheles gambiae cytochrome P450 pr...    24   9.0  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 9   SLVAATIAALHNRTAGEKPPIPI--KSRANTESKHSQLEKEISEKQSRRAS 57
           SL+AA +A      +  +PP P+  +S A  + +  Q ++   E++  RAS
Sbjct: 162 SLLAAKVAGGQPSASSRQPPTPLPRRSSAQPQQQQQQQQRNQQEQEQPRAS 212


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 9   SLVAATIAALHNRTAGEKPPIPI--KSRANTESKHSQLEKEISEKQSRRAS 57
           SL+AA +       +  +PP P+  +S A  + +  Q ++   E++  RAS
Sbjct: 186 SLLAAKVGGGQPSASPRQPPTPLPRRSSAQPQQQQQQQQRNQHEQEQPRAS 236


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/70 (25%), Positives = 25/70 (35%)

Query: 467 HMYSSLPRSSVLASEARVAFGNKHSMVVARGRGHSVPNLGLYRYHTPSRGFETPISDPRS 526
           H Y   P + +LAS      G      +A GRG S P       +  S    +  S P  
Sbjct: 522 HAYELNPPAYLLASPVTGLPGVAPVPALATGRGWSSPQASPVSGYDSSTSISSVCSGPEE 581

Query: 527 SRTPHFEAAT 536
               H  A++
Sbjct: 582 DNASHSSASS 591


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 377  DLERALHEAKQRLDDAE-QKLQKEMLQRSSLETQKLELLSK 416
            DLER L  A++ L+DA+  K    +++  +++ Q +    K
Sbjct: 1552 DLERRLSAAEKELEDAQLTKRLSSLVEAKNIQNQNIRSYQK 1592


>AY095933-1|AAM34435.1|  505|Anopheles gambiae cytochrome P450
           protein.
          Length = 505

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 457 NYGRQIERNT-HMYSSLPRSSVLASEARVAFGNKHSMVVARGRGHSVPNLGLY 508
           +Y     RN   + +S P  ++    + + F +  +   A+G+  S P +GLY
Sbjct: 25  HYRHWANRNLPQLEASFPLGNMKGVGSEIHFNDVLNEAYAKGKAQSAPLVGLY 77


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,061
Number of Sequences: 2123
Number of extensions: 19032
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 540
length of database: 516,269
effective HSP length: 67
effective length of query: 473
effective length of database: 374,028
effective search space: 176915244
effective search space used: 176915244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)