Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
(540 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021714-1|AAH21714.1| 876|Homo sapiens PTPRF interacting prote... 70 2e-11
BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein. 64 9e-10
BC046159-1|AAH46159.1| 272|Homo sapiens Similar to PTPRF intera... 64 9e-10
BC022873-1|AAH22873.1| 292|Homo sapiens Unknown (protein for IM... 64 9e-10
AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein. 64 9e-10
AB033056-1|BAA86544.2| 932|Homo sapiens KIAA1230 protein protein. 64 9e-10
AF034803-1|AAC26104.1| 783|Homo sapiens liprin-beta2 protein. 64 2e-09
AJ276680-1|CAB77544.1| 170|Homo sapiens putative Liprin related... 38 0.089
AB049149-1|BAB39690.1| 170|Homo sapiens hSgt2p protein. 38 0.089
BX293560-1|CAI40652.1| 425|Homo sapiens novel protein protein. 35 0.63
BC126192-1|AAI26193.1| 425|Homo sapiens zinc finger protein 645... 35 0.63
BC126190-1|AAI26191.1| 425|Homo sapiens zinc finger protein 645... 35 0.63
BC074910-1|AAH74910.1| 425|Homo sapiens zinc finger protein 645... 35 0.63
AK098601-1|BAC05348.1| 425|Homo sapiens protein ( Homo sapiens ... 35 0.63
U52426-1|AAC51627.1| 685|Homo sapiens GOK protein. 34 1.5
BC053668-1|AAH53668.1| 400|Homo sapiens leucine rich repeat (in... 34 1.5
BC021300-1|AAH21300.1| 685|Homo sapiens stromal interaction mol... 34 1.5
AK128825-1|BAC87626.1| 230|Homo sapiens protein ( Homo sapiens ... 34 1.5
AK000255-1|BAA91035.1| 400|Homo sapiens protein ( Homo sapiens ... 34 1.5
D10667-1|BAA36971.1| 1052|Homo sapiens smooth muscle myosin heav... 33 1.9
BC104906-1|AAI04907.1| 1938|Homo sapiens myosin, heavy chain 11,... 33 1.9
BC101677-1|AAI01678.1| 1938|Homo sapiens myosin, heavy chain 11,... 33 1.9
AY520817-1|AAS98911.1| 1945|Homo sapiens smooth muscle myosin he... 33 1.9
AY520816-1|AAS98910.1| 1979|Homo sapiens smooth muscle myosin he... 33 1.9
AF001548-1|AAC31665.1| 1857|Homo sapiens Myosin heavy chain (MHY... 33 1.9
AB020673-1|BAA74889.2| 1984|Homo sapiens KIAA0866 protein protein. 33 1.9
X59286-1|CAA41977.1| 532|Homo sapiens ICAM-1 protein. 33 2.5
X06990-1|CAA30051.1| 532|Homo sapiens intercellular adhesion mo... 33 2.5
M55038-1|AAA60393.1| 276|Homo sapiens cell surface glycoprotein... 33 2.5
M24283-1|AAA52708.1| 532|Homo sapiens ICAM1 protein. 33 2.5
J03132-1|AAA52709.1| 532|Homo sapiens ICAM1 protein. 33 2.5
BT006854-1|AAP35500.1| 532|Homo sapiens intercellular adhesion ... 33 2.5
BC015969-1|AAH15969.1| 532|Homo sapiens intercellular adhesion ... 33 2.5
AY225514-1|AAO30128.1| 532|Homo sapiens intercellular adhesion ... 33 2.5
AF340039-1|AAQ14902.1| 528|Homo sapiens intercellular adhesion ... 33 2.5
AF340038-1|AAQ14901.1| 532|Homo sapiens intercellular adhesion ... 33 2.5
AF272390-1|AAF78783.1| 1742|Homo sapiens myosin 5c protein. 33 2.5
AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DD... 33 2.5
AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar roden... 33 2.5
AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein. 33 2.5
AK130578-1|BAC85386.1| 241|Homo sapiens protein ( Homo sapiens ... 32 4.4
AK000975-1|BAA91451.1| 537|Homo sapiens protein ( Homo sapiens ... 32 4.4
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein. 31 7.8
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot... 31 7.8
AL590431-8|CAH71265.1| 232|Homo sapiens tropomyosin 3 protein. 31 7.8
>BC021714-1|AAH21714.1| 876|Homo sapiens PTPRF interacting protein,
binding protein 2 (liprin beta 2) protein.
Length = 876
Score = 70.1 bits (164), Expect = 2e-11
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 313 IPPPCCMHDRSWPSHPSLPQTTVRGGFKNDA-EDRVRRLEADKXXXXXXXXXXXXXISAQ 371
IP P + + W SL Q N+ ++R+ RLE DK + AQ
Sbjct: 77 IPGPTAAYIKEW-FEESLSQVNHHSAASNETYQERLARLEGDKESLILQVSVITDQVEAQ 135
Query: 372 TEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSEV 420
EK+ DLE L + +L+ AE+ LQ+E+L R+SLETQKL+L++++SE+
Sbjct: 136 GEKIRDLEVCLEGHQVKLNAAEEMLQQELLSRTSLETQKLDLMTEVSEL 184
>BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein.
Length = 1011
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+E+L R
Sbjct: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSR 162
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++S +
Sbjct: 163 TSLETQKLDLMAEISNL 179
>BC046159-1|AAH46159.1| 272|Homo sapiens Similar to PTPRF
interacting protein, binding protein 1 (liprin beta 1)
protein.
Length = 272
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+E+L R
Sbjct: 96 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSR 155
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++S +
Sbjct: 156 TSLETQKLDLMAEISNL 172
>BC022873-1|AAH22873.1| 292|Homo sapiens Unknown (protein for
IMAGE:4102924) protein.
Length = 292
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+E+L R
Sbjct: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSR 162
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++S +
Sbjct: 163 TSLETQKLDLMAEISNL 179
>AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein.
Length = 1005
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+E+L R
Sbjct: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSR 162
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++S +
Sbjct: 163 TSLETQKLDLMAEISNL 179
>AB033056-1|BAA86544.2| 932|Homo sapiens KIAA1230 protein protein.
Length = 932
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+E+L R
Sbjct: 24 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSR 83
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++S +
Sbjct: 84 TSLETQKLDLMAEISNL 100
>AF034803-1|AAC26104.1| 783|Homo sapiens liprin-beta2 protein.
Length = 783
Score = 63.7 bits (148), Expect = 2e-09
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQR 403
++R+ RLE DK + AQ EK+ DLE L + +L+ AE+ LQ+E+L R
Sbjct: 15 QERLARLEGDKESLILQVSVLTDQVEAQGEKIRDLEVCLEGHQVKLNAAEEMLQQELLSR 74
Query: 404 SSLETQKLELLSKLSEV 420
+SLETQKL+L++++SE+
Sbjct: 75 TSLETQKLDLMTEVSEL 91
>AJ276680-1|CAB77544.1| 170|Homo sapiens putative Liprin related
protein protein.
Length = 170
Score = 37.9 bits (84), Expect = 0.089
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQK 398
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+
Sbjct: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQ 157
>AB049149-1|BAB39690.1| 170|Homo sapiens hSgt2p protein.
Length = 170
Score = 37.9 bits (84), Expect = 0.089
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 344 EDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQK 398
++R+ RLE DK + AQ EK+ DLE L E +++L+ E+ LQ+
Sbjct: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQ 157
>BX293560-1|CAI40652.1| 425|Homo sapiens novel protein protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 PRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSH 327
P+ N+ET + ++ +H RWP W + C PPP +H RS SH
Sbjct: 366 PQFTENQETLSPQFTQTDAMDHRRWPA---WKRLSPCPPTRSPPPSTLHGRSHHSH 418
>BC126192-1|AAI26193.1| 425|Homo sapiens zinc finger protein 645
protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 PRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSH 327
P+ N+ET + ++ +H RWP W + C PPP +H RS SH
Sbjct: 366 PQFTENQETLSPQFTQTDAMDHRRWPA---WKRLSPCPPTRSPPPSTLHGRSHHSH 418
>BC126190-1|AAI26191.1| 425|Homo sapiens zinc finger protein 645
protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 PRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSH 327
P+ N+ET + ++ +H RWP W + C PPP +H RS SH
Sbjct: 366 PQFTENQETLSPQFTQTDAMDHRRWPA---WKRLSPCPPTRSPPPSTLHGRSHHSH 418
>BC074910-1|AAH74910.1| 425|Homo sapiens zinc finger protein 645
protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 PRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSH 327
P+ N+ET + ++ +H RWP W + C PPP +H RS SH
Sbjct: 366 PQFTENQETLSPQFTQTDAMDHRRWPA---WKRLSPCPPTRSPPPSTLHGRSHHSH 418
>AK098601-1|BAC05348.1| 425|Homo sapiens protein ( Homo sapiens
cDNA FLJ25735 fis, clone TST05676. ).
Length = 425
Score = 35.1 bits (77), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 PRRIRNEETPPDLHRRWNSYEHFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSH 327
P+ N+ET + ++ +H RWP W + C PPP +H RS SH
Sbjct: 366 PQFTENQETLSPQFTQTDAMDHRRWPA---WKRLSPCPPTRSPPPSTLHGRSHHSH 418
>U52426-1|AAC51627.1| 685|Homo sapiens GOK protein.
Length = 685
Score = 33.9 bits (74), Expect = 1.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 375 MVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
M DLE LH A+Q L D +++L K + ++E +K+ L KL +
Sbjct: 245 MKDLE-GLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRD 288
>BC053668-1|AAH53668.1| 400|Homo sapiens leucine rich repeat (in
FLII) interacting protein 2 protein.
Length = 400
Score = 33.9 bits (74), Expect = 1.5
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 369 SAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELL 414
S T ++D + +L E ++ L + E+K +K M+ + L+ +K L+
Sbjct: 96 SGDTSSLIDPDTSLSELRESLSEVEEKYKKAMVSNAQLDNEKNNLI 141
>BC021300-1|AAH21300.1| 685|Homo sapiens stromal interaction
molecule 1 protein.
Length = 685
Score = 33.9 bits (74), Expect = 1.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 375 MVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
M DLE LH A+Q L D +++L K + ++E +K+ L KL +
Sbjct: 245 MKDLE-GLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRD 288
>AK128825-1|BAC87626.1| 230|Homo sapiens protein ( Homo sapiens
cDNA FLJ46268 fis, clone TESTI4027262. ).
Length = 230
Score = 33.9 bits (74), Expect = 1.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 296 WPEGGWWPPMCWCHGPPIPPPCCMHDRSWPSHPSLPQTTV 335
WP P+ GP IPPP C+ PS S P+T V
Sbjct: 7 WPRTPTNVPIARVQGPGIPPPACVSHCRPPSPDSAPRTVV 46
>AK000255-1|BAA91035.1| 400|Homo sapiens protein ( Homo sapiens
cDNA FLJ20248 fis, clone COLF6543. ).
Length = 400
Score = 33.9 bits (74), Expect = 1.5
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 369 SAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELL 414
S T ++D + +L E ++ L + E+K +K M+ + L+ +K L+
Sbjct: 96 SGDTSSLIDPDTSLSELRESLSEVEEKYKKAMVSNAQLDNEKNNLI 141
>D10667-1|BAA36971.1| 1052|Homo sapiens smooth muscle myosin heavy
chain protein.
Length = 1052
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 30 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 75
>BC104906-1|AAI04907.1| 1938|Homo sapiens myosin, heavy chain 11,
smooth muscle protein.
Length = 1938
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 916 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 961
>BC101677-1|AAI01678.1| 1938|Homo sapiens myosin, heavy chain 11,
smooth muscle protein.
Length = 1938
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 916 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 961
>AY520817-1|AAS98911.1| 1945|Homo sapiens smooth muscle myosin heavy
chain isoform SM2 protein.
Length = 1945
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 923 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 968
>AY520816-1|AAS98910.1| 1979|Homo sapiens smooth muscle myosin heavy
chain isoform SM1 protein.
Length = 1979
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 923 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 968
>AF001548-1|AAC31665.1| 1857|Homo sapiens Myosin heavy chain (MHY11)
(5'partial) protein.
Length = 1857
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 801 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 846
>AB020673-1|BAA74889.2| 1984|Homo sapiens KIAA0866 protein protein.
Length = 1984
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 374 KMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSE 419
K +LE LHE + RL++ E + Q+ +R + Q L+L +L E
Sbjct: 928 KKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEE 973
>X59286-1|CAA41977.1| 532|Homo sapiens ICAM-1 protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>X06990-1|CAA30051.1| 532|Homo sapiens intercellular adhesion
molecule-1 ICAM-1 protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>M55038-1|AAA60393.1| 276|Homo sapiens cell surface glycoprotein
protein.
Length = 276
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 150 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 182
>M24283-1|AAA52708.1| 532|Homo sapiens ICAM1 protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>J03132-1|AAA52709.1| 532|Homo sapiens ICAM1 protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>BT006854-1|AAP35500.1| 532|Homo sapiens intercellular adhesion
molecule 1 (CD54), human rhinovirus receptor protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>BC015969-1|AAH15969.1| 532|Homo sapiens intercellular adhesion
molecule 1 (CD54), human rhinovirus receptor protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>AY225514-1|AAO30128.1| 532|Homo sapiens intercellular adhesion
molecule 1 (CD54), human rhinovirus receptor protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>AF340039-1|AAQ14902.1| 528|Homo sapiens intercellular adhesion
molecule 1 protein.
Length = 528
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 402 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 434
>AF340038-1|AAQ14901.1| 532|Homo sapiens intercellular adhesion
molecule 1 protein.
Length = 532
Score = 33.1 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 293 HFRWPEGGWWPPMCWCHGPPIPPPCCMHDRSWP 325
++ WPE PMC G P+P C+ D ++P
Sbjct: 406 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>AF272390-1|AAF78783.1| 1742|Homo sapiens myosin 5c protein.
Length = 1742
Score = 33.1 bits (72), Expect = 2.5
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 368 ISAQTEKMVDLERALHEAKQRLDDA-EQKLQKEMLQRSSLETQKLELLSKLSE 419
+ A+ EK R E +R DA E+KL K S LETQK ++ KL E
Sbjct: 929 LEAELEKAATHRRNYEEKGKRYRDAVEEKLAKLQKHNSELETQKEQIQLKLQE 981
>AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DDBJ
Accession Number AB006629, restin and CLIP-170 protein.
Length = 419
Score = 33.1 bits (72), Expect = 2.5
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 342 DAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEML 401
+ + + +L A++ I + EK + L +A HE Q + +AE+KLQ+ L
Sbjct: 322 EKQQHIEQLLAERDLERAEVAKATSHI-CEVEKEIALLKAQHE--QYVAEAEEKLQRARL 378
Query: 402 QRSSLETQKLELLSKLSE 419
S+ +K++L ++L E
Sbjct: 379 LVESVRKEKVDLSNQLEE 396
>AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar rodent
cytoplasmic linker protein CLIP-115 and restin protein.
Length = 1046
Score = 33.1 bits (72), Expect = 2.5
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 342 DAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEML 401
+ + + +L A++ I + EK + L +A HE Q + +AE+KLQ+ L
Sbjct: 363 EKQQHIEQLLAERDLERAEVAKATSHI-CEVEKEIALLKAQHE--QYVAEAEEKLQRARL 419
Query: 402 QRSSLETQKLELLSKLSE 419
S+ +K++L ++L E
Sbjct: 420 LVESVRKEKVDLSNQLEE 437
Score = 31.5 bits (68), Expect = 7.8
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 369 SAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQ 409
S + EK VDL L E +++++D + ++++E + + LETQ
Sbjct: 423 SVRKEK-VDLSNQLEEERRKVEDLQFRVEEESITKGDLETQ 462
>AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein.
Length = 1024
Score = 33.1 bits (72), Expect = 2.5
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 342 DAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQKEML 401
+ + + +L A++ I + EK + L +A HE Q + +AE+KLQ+ L
Sbjct: 376 EKQQHIEQLLAERDLERAEVAKATSHI-CEVEKEIALLKAQHE--QYVAEAEEKLQRARL 432
Query: 402 QRSSLETQKLELLSKLSE 419
S+ +K++L ++L E
Sbjct: 433 LVESVRKEKVDLSNQLEE 450
>AK130578-1|BAC85386.1| 241|Homo sapiens protein ( Homo sapiens
cDNA FLJ27068 fis, clone SPL01475. ).
Length = 241
Score = 32.3 bits (70), Expect = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 299 GGWWPPMCWCHGPPI 313
GGWWP W H PP+
Sbjct: 56 GGWWPQPFWIHSPPL 70
>AK000975-1|BAA91451.1| 537|Homo sapiens protein ( Homo sapiens
cDNA FLJ10113 fis, clone HEMBA1002768, weakly similar to
Homo sapiens mRNA for Cdc42-interacting protein 4. ).
Length = 537
Score = 32.3 bits (70), Expect = 4.4
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 309 HGPPIPPPCCMHDRSWPSHPSLPQTTVRGGFKNDAEDRVRRLEADKXXXXXXXXXXXXXI 368
H PP PPP + P+ P P+ K R K
Sbjct: 259 HQPPPPPPASASPSAVPNGPQSPKQQ-----KEPLSHRFNEFMTSKPKIHCFRSLERGGA 313
Query: 369 SAQTEKMVDLERALHEAKQRLDDAEQKLQKEMLQRSSLETQK 410
+ + + E+ + +Q++D+ +++QKEM QR ++ K
Sbjct: 314 TPEDFSNLPPEQRRKKLQQKVDELNKEIQKEMDQRDAITKMK 355
>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
Length = 3259
Score = 31.5 bits (68), Expect = 7.8
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 324 WPSHPSLPQTTVRGGFK-NDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERAL 382
WPSH S + ++GG + +++ +EA+K ++ ++E++ L+ +
Sbjct: 1288 WPSH-SEDASALQGGTSVAQIKAQLKEIEAEKVELELKVSSTTSELTKKSEEVFQLQEQI 1346
Query: 383 --------------HEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSEV 420
HEA+ + +QKL+ LQ + LE + EL KL E+
Sbjct: 1347 NKQGLEIESLKTVSHEAEVHAESLQQKLESSQLQIAGLEHLR-ELQPKLDEL 1397
>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
Length = 3225
Score = 31.5 bits (68), Expect = 7.8
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 324 WPSHPSLPQTTVRGGFK-NDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERAL 382
WPSH S + ++GG + +++ +EA+K ++ ++E++ L+ +
Sbjct: 1254 WPSH-SEDASALQGGTSVAQIKAQLKEIEAEKVELELKVSSTTSELTKKSEEVFQLQEQI 1312
Query: 383 --------------HEAKQRLDDAEQKLQKEMLQRSSLETQKLELLSKLSEV 420
HEA+ + +QKL+ LQ + LE + EL KL E+
Sbjct: 1313 NKQGLEIESLKTVSHEAEVHAESLQQKLESSQLQIAGLEHLR-ELQPKLDEL 1363
>AL590431-8|CAH71265.1| 232|Homo sapiens tropomyosin 3 protein.
Length = 232
Score = 31.5 bits (68), Expect = 7.8
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 341 NDAEDRVRRLEADKXXXXXXXXXXXXXISAQTEKMVDLERALHEAKQRLDDAEQKLQ--K 398
+DAE+R RL+ + +++ ++ +E L A++RL A QKL+ +
Sbjct: 22 DDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAE 81
Query: 399 EMLQRSSLETQKLEL 413
+ +E Q+++L
Sbjct: 82 KAADEKKMELQEIQL 96
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.312 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,678,312
Number of Sequences: 224733
Number of extensions: 3095335
Number of successful extensions: 9331
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9256
Number of HSP's gapped (non-prelim): 79
length of query: 540
length of database: 73,234,838
effective HSP length: 94
effective length of query: 446
effective length of database: 52,109,936
effective search space: 23241031456
effective search space used: 23241031456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 68 (31.5 bits)
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