GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001140-TA|BGIBMGA001140-PA|IPR013838|Beta tubulin,
autoregulation binding site
         (540 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.91 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.91 

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 280 TPPDLHRRWNSYEHFR---WPEGGWWPPMCWCHGPPIPP 315
           TP   H R  S E        +G  +   C  HGPP+PP
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPP 443


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 280 TPPDLHRRWNSYEHFR---WPEGGWWPPMCWCHGPPIPP 315
           TP   H R  S E        +G  +   C  HGPP+PP
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPP 443


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,263
Number of Sequences: 429
Number of extensions: 5821
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 540
length of database: 140,377
effective HSP length: 61
effective length of query: 479
effective length of database: 114,208
effective search space: 54705632
effective search space used: 54705632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)