Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001139-TA|BGIBMGA001139-PA|IPR007087|Zinc finger,
C2H2-type
(473 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 82 1e-17
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 68 2e-13
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 50 4e-08
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 45 2e-06
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 39 1e-04
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 38 2e-04
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 29 0.11
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 28 0.19
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 24 2.4
DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein. 24 3.2
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 4.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 7.3
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 7.3
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 9.7
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 81.8 bits (193), Expect = 1e-17
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 66 DNNNVAAAQNTDTRPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRK 125
+N +V +T RP++ CDVC F + + RH HTG +P++C VC K F +
Sbjct: 133 ENLSVHRRIHTKERPYK----CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQS 188
Query: 126 DHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMK 185
L H THT PY C C +GF ++ H + H G+ TC +C
Sbjct: 189 GQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRT-HTGEKPY--TCDICGKSFGYNH 245
Query: 186 SLRVHFLNRHG 196
L++H + +G
Sbjct: 246 VLKLHQVAHYG 256
Score = 80.6 bits (190), Expect = 3e-17
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 85 FECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKSLPYHCP 144
+ C++C F+ A + RH HTG KPY+C C K F K++L+ H HTK PY C
Sbjct: 92 YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCD 151
Query: 145 ICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVHFLNRHG 196
+C R F+ + H + H G+ C +CS L +H G
Sbjct: 152 VCERAFEHSGKLHRHMR-IHTGERP--HKCTVCSKTFIQSGQLVIHMRTHTG 200
Score = 71.3 bits (167), Expect = 2e-14
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 78 TRPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTK 137
T K ++C+ C+ FS N+ H+ HT +PY+C VC++ F L H HT
Sbjct: 113 THTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTG 172
Query: 138 SLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVH 190
P+ C +C++ F + + H + H G+ V C C K L+VH
Sbjct: 173 ERPHKCTVCSKTFIQSGQLVIHMRT-HTGEKPYV--CKACGKGFTCSKQLKVH 222
Score = 55.2 bits (127), Expect = 1e-09
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 78 TRPHRKIFECDVCNMKFSNGANMRRHKMRH--TGVKPYECRVCQKRFFRKDHLAEHFTTH 135
T K ++C +C F + H H G PY C +C K F L H+ TH
Sbjct: 55 TNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTH 114
Query: 136 TKSLPYHCPICNRGFQRQIAMRAH 159
T PY C C++ F + + H
Sbjct: 115 TGEKPYQCEYCSKSFSVKENLSVH 138
Score = 54.0 bits (124), Expect = 3e-09
Identities = 25/84 (29%), Positives = 34/84 (40%)
Query: 78 TRPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTK 137
T K + C C F+ ++ H HTG KPY C +C K F L H H
Sbjct: 197 THTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYG 256
Query: 138 SLPYHCPICNRGFQRQIAMRAHFQ 161
Y C +C+ F + M H +
Sbjct: 257 EKVYKCTLCHETFGSKKTMELHIK 280
Score = 49.6 bits (113), Expect = 6e-08
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 41 KCTTCNDFSTSS---VRTLSTHMGQ----CFPDNNNVAAAQN--TDTRPH--RKIFECDV 89
KCT C+ S V + TH G+ C ++ TR H K + CD+
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDI 236
Query: 90 CNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKS 138
C F ++ H++ H G K Y+C +C + F K + H TH+ S
Sbjct: 237 CGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDS 285
Score = 48.0 bits (109), Expect = 2e-07
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 111 KPYECRVCQKRFFRKDHLAEHFTTHTKSL--PYHCPICNRGFQRQIAMRAHFQNEHVGQH 168
K Y+C +CQK F +K+ H +H K PY C IC + F + H++ H G+
Sbjct: 60 KTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRT-HTGEK 118
Query: 169 DLVKTCPLCSYRAPTMKSLRVH 190
C CS ++L VH
Sbjct: 119 PY--QCEYCSKSFSVKENLSVH 138
Score = 33.1 bits (72), Expect = 0.005
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGE 455
CT CS TF S +H H P+ C CG+
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGK 211
Score = 31.1 bits (67), Expect = 0.021
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDSNPWKCNIC 453
C +CS +F +H+ H P+KC++C
Sbjct: 122 CEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153
Score = 30.7 bits (66), Expect = 0.028
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDS--NPWKCNICGE 455
C C F LY H H +P++CNICG+
Sbjct: 64 CLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGK 99
Score = 29.1 bits (62), Expect = 0.084
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 421 VCTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGE 455
VC C F S +H H P+ C+ICG+
Sbjct: 205 VCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGK 239
Score = 26.2 bits (55), Expect = 0.59
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGE 455
C C F S H H P KC +C +
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSK 183
Score = 26.2 bits (55), Expect = 0.59
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGE 455
C C +F + + LH+ H +KC +C E
Sbjct: 234 CDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHE 267
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 134 THTKSLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVHFLN 193
T+ + Y C +C + F ++ ++H ++ H + + C +C L H+
Sbjct: 55 TNIEEKTYQCLLCQKAFDQKNLYQSHLRS-HGKEGEDPYRCNICGKTFAVPARLTRHYRT 113
Query: 194 RHG 196
G
Sbjct: 114 HTG 116
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 290 QNHSDSRVNGEGPSSPQSGDSAIASSSLTAG 320
+ HSDS V G SP + I+ +S++ G
Sbjct: 280 KTHSDSSVVGSPRDSPIEPEIEISQNSVSTG 310
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 422 CTFCSITFPDSTLYFLHKGCHCDSN 446
CT C TF LH H DS+
Sbjct: 262 CTLCHETFGSKKTMELHIKTHSDSS 286
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 67.7 bits (158), Expect = 2e-13
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 107 HTGVKPYECRVCQKRFFRKDHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRAHFQNEHVG 166
HTG KP+EC C KRF R HL H HT PYHC C+R F + +R H + H G
Sbjct: 4 HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLR-VHTG 62
Query: 167 QHDLVKTCPLCS 178
+ C LC+
Sbjct: 63 ERPY--ACELCA 72
Score = 64.5 bits (150), Expect = 2e-12
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 78 TRPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTK 137
T K FEC C+ +F+ +++ H HTG KPY C C ++F + +L H HT
Sbjct: 3 THTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTG 62
Query: 138 SLPYHCPIC 146
PY C +C
Sbjct: 63 ERPYACELC 71
Score = 33.1 bits (72), Expect = 0.005
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 134 THTKSLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVH 190
THT P+ CP C++ F R ++ H + H G+ C C + + +LR H
Sbjct: 3 THTGEKPFECPECHKRFTRDHHLKTHMR-LHTGEKPY--HCSHCDRQFVQVANLRRH 56
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 50.0 bits (114), Expect = 4e-08
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 82 RKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKSLPY 141
+K F C C + + ++ H HT P +C +C K F R L H THT P+
Sbjct: 14 KKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPF 71
Query: 142 HCPICNRGF 150
C CNR F
Sbjct: 72 SCQHCNRAF 80
Score = 40.7 bits (91), Expect = 3e-05
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 111 KPYECRVCQKRFFRKDHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDL 170
K + C+ C+K + L H THT LP C +C + F R ++ H + H G+
Sbjct: 15 KSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRT-HTGEKPF 71
Query: 171 VKTCPLCS 178
+C C+
Sbjct: 72 --SCQHCN 77
Score = 37.1 bits (82), Expect = 3e-04
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 79 RPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRF 122
R H +C +C FS ++ H HTG KP+ C+ C + F
Sbjct: 37 RTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 80
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 419 SLVCTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGEQCCNVYEFNSHL 467
S C +C + +H H + P KC++CG+ + H+
Sbjct: 16 SFSCKYCEKVYVSLGALKMHIRTH--TLPCKCHLCGKAFSRPWLLQGHI 62
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 44.8 bits (101), Expect = 2e-06
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 140 PYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVHFLNRH 195
P CP C R F +++ HFQ++H Q D + C C+ R T SL H +H
Sbjct: 5 PQECPYCRRNFSCYYSLKRHFQDKH-EQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59
Score = 36.3 bits (80), Expect = 6e-04
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 111 KPYECRVCQKRFFRKDHLAEHFTT-HTKS-LPYHCPICNRGFQRQIAMRAHFQNEHVGQH 168
+P EC C++ F L HF H +S Y C CNR ++ + ++ H +H G
Sbjct: 4 EPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63
Query: 169 DLVK 172
++K
Sbjct: 64 GMLK 67
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 84 IFECDVCNMKFSNGANMRRHK-MRHTG 109
++ C+ CN ++ ++ HK ++H G
Sbjct: 35 LYVCEFCNRRYRTKNSLTTHKSLQHRG 61
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 38.7 bits (86), Expect = 1e-04
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 82 RKIFECDVCNMKFSNGANMRRHKM-RHTG-VKPYECRVCQKRFFRKDHLAEHFTTHTKSL 139
+K+F C +C + A+++RH +H + Y C +C++ + ++ L H T+ KS
Sbjct: 3 KKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSR 62
Query: 140 P 140
P
Sbjct: 63 P 63
Score = 27.1 bits (57), Expect = 0.34
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 111 KPYECRVCQKRFFRKDHLAEHFTT-HT-KSLPYHCPICNRGFQRQIAMRAHFQNEH 164
K + C++C K K L H H + Y C IC R + + ++ H H
Sbjct: 4 KLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 37.5 bits (83), Expect = 2e-04
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 99 NMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRA 158
++ H H G KP++C C K L H +H+ Y C C + +++
Sbjct: 3 HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKL 62
Query: 159 HFQ 161
H +
Sbjct: 63 HLR 65
Score = 33.1 bits (72), Expect = 0.005
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 438 HKGCHCDSNPWKCNICGEQCCNVYEFNSHLLSKSH 472
H H S P+KC C C N NSHL S S+
Sbjct: 7 HLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSN 41
Score = 32.3 bits (70), Expect = 0.009
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 125 KDHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRAHFQ-NEHVGQHDLVKTCPLCSYRAPT 183
K HL H H S P+ C C+ + + +H + + +V Q+ C C+Y
Sbjct: 1 KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQY----RCANCTYATKY 56
Query: 184 MKSLRVH 190
SL++H
Sbjct: 57 CHSLKLH 63
Score = 29.1 bits (62), Expect = 0.084
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 83 KIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVC 118
K F+C+ C+ N + + H H+ V Y C C
Sbjct: 15 KPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANC 50
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 28.7 bits (61), Expect = 0.11
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 85 FECDVCNMKFSNGANMRRHK-MRH-TGVKPYECRVCQKRFFRKDHLAEH 131
+ CDVC S ++RHK +H + C +C K F + L H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNH 420
Score = 27.9 bits (59), Expect = 0.19
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 141 YHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVH 190
Y C +C + ++ ++ H + +H Q C LC T+ SL H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHF-QPLNSAVCALCHKVFRTLNSLNNH 420
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 27.9 bits (59), Expect = 0.19
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 141 YHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVH 190
+ C CN+ +R H QN H + C +C ++ SLR H
Sbjct: 3 FRCEPCNKILTSLTRLRRHIQNVHT-RPSKEPICNICKRVYSSLNSLRNH 51
Score = 27.1 bits (57), Expect = 0.34
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 85 FECDVCNMKFSNGANMRRHKMRHTGVKPYE---CRVCQKRFFRKDHLAEH 131
F C+ CN ++ +RRH +++ +P + C +C++ + + L H
Sbjct: 3 FRCEPCNKILTSLTRLRRH-IQNVHTRPSKEPICNICKRVYSSLNSLRNH 51
Score = 27.1 bits (57), Expect = 0.34
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 74 QNTDTRPHRKIFECDVCNMKFSNGANMRRHK 104
QN TRP ++ C++C +S+ ++R HK
Sbjct: 23 QNVHTRPSKEPI-CNICKRVYSSLNSLRNHK 52
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 24.2 bits (50), Expect = 2.4
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 186 SLRVHFLNRHGIDLDNPGPGNNSVSVLAAGIANAAYGEGSMDPSTMSALGALGSGLSVSV 245
S+++ F H +D + ++ +S A+ + A +M T LG + SG SV
Sbjct: 328 SVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSV-- 385
Query: 246 AAAYSDSGDSN 256
+SDSG++N
Sbjct: 386 ---HSDSGENN 393
>DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein.
Length = 132
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 45 CNDFSTSSVRTLSTHMGQCFPDNN 68
C D + S+ S+ + QCF DNN
Sbjct: 103 CKDITESNSCKKSSKLLQCFIDNN 126
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 216 IANAAYGEGSMDPSTMSALGALGSGLSVSVAAAYS 250
+ N+ GEG+ + LG + +G ++ + A+Y+
Sbjct: 621 LLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYT 655
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 7.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 282 NNETFSPAQNHSDSRVNGEGPSSPQSGDSAIASSSLTAGLPANITPSI 329
N +T + + SR N S Q+ + A S+ GL TPSI
Sbjct: 135 NGDTVTDVEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSI 182
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 7.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 282 NNETFSPAQNHSDSRVNGEGPSSPQSGDSAIASSSLTAGLPANITPSI 329
N +T + + SR N S Q+ + A S+ GL TPSI
Sbjct: 130 NGDTVTDVEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSI 177
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 209 VSVLAAGIANAAYGEGSMDPSTMSALGALGS 239
V + AGI + G + P LGA+GS
Sbjct: 313 VQAMIAGIVVISAGADAYPPLAAIVLGAIGS 343
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.315 0.129 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,777
Number of Sequences: 429
Number of extensions: 5171
Number of successful extensions: 63
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 46
length of query: 473
length of database: 140,377
effective HSP length: 60
effective length of query: 413
effective length of database: 114,637
effective search space: 47345081
effective search space used: 47345081
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
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