Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)          162   5e-40
SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   2e-13
SB_4971| Best HMM Match : Ras (HMM E-Value=0)                          31   1.3  
SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.7  
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)                    30   3.9  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   6.7  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   6.7  
SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)                     29   8.9  

>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score =  162 bits (393), Expect = 5e-40
 Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 6/222 (2%)

Query: 69  GVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKFGERLINVYCT 128
           GV+GSG+CVFS++ I + F +++ LNGY++KI HGDWFGGK  G C I    R I+ + T
Sbjct: 258 GVIGSGVCVFSRYPIIESFTYRYTLNGYMYKIAHGDWFGGKSSGYCVIDHPLRPIHFFTT 317

Query: 129 HLHAEYH-EDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKIISQLP 187
           HLHAEY+ ++D YLAHRV QAY  A+F++  + P+D  I+ GD+N+ P D+ Y+I+  LP
Sbjct: 318 HLHAEYNRKNDEYLAHRVTQAYQLAQFIEHATQPSDCVIVCGDMNSEPTDMCYRILCYLP 377

Query: 188 SLLDPYNMKFEGTNPLIAKASGTSDNLNNSYSDPKQV-KAYPEGKRIDHILFHTNHSWEA 246
            L D +    +            S N    ++ P+++ K   +GKRID++ +  + S   
Sbjct: 378 GLTDTW--LEQNKESYHGNTCDVSHNSYTGFTLPQELRKGTADGKRIDYVFYRADRS-VM 434

Query: 247 RVVNFGNPLPDRVPEQQFSYSDHNAVSLELHLKPCEQKLNQR 288
            +++    +  ++P + FSYSDH  V     +K    K +++
Sbjct: 435 ELLDCRVTM-GKIPGEDFSYSDHEGVLATFSIKTSVVKSSEK 475


>SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 130 LHAEYH-EDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKIISQLPS 188
           LHAEY+ +DD YLAHRV QAY  A+ ++L + P+D  I+ GD+N+ P DL Y+I+  LP 
Sbjct: 1   LHAEYNRQDDEYLAHRVTQAYQFAQLIELITKPSDCVIVCGDMNSEPTDLCYRILCNLPG 60

Query: 189 LLDPY 193
           L D +
Sbjct: 61  LTDTW 65


>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 209

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 20  KERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSYYFYSGVLGSGLC 76
           +ER+  ++T   +S H IV + +V   + +L+L + L+ V  Y+    + +L    C
Sbjct: 67  QERFRTLTTAYYRSAHGIVLIYDVNESETFLHLSQWLEEVSEYACEGVNTILVGNKC 123


>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 1   FIINLMLLLRGIPVVSKNKKERYEAISTY 29
           F++ ++L L GIP++ K   ERY  + TY
Sbjct: 303 FLMAILLFLSGIPLLEKKADERYGNLDTY 331


>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
          Length = 860

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 170 DLNTAPGDLSYKIISQLPSLLDPYNMKFE 198
           D NT PG LS K +S+L +LL P    F+
Sbjct: 494 DENTKPGYLSSKTLSKLAALLQPLKSMFD 522


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 42  EVWSEKDYLYLKENLKNVLPYSYYFYSGVLGSGLCVF 78
           +VWS     +    L  +LPY  YF+S  +  G C++
Sbjct: 306 DVWSLDLVRFQWTKLPKILPYPVYFHSAAITPGGCMY 342


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 188 SLLDPYNMKFEGTNPLIAKASGTSDNLNN--SYSDPKQVKAYP 228
           S+  P  ++ +G  P+   AS TS    N  SYSDP Q ++ P
Sbjct: 779 SMGKPDTIEKQGITPVSESASSTSQPQKNQKSYSDPSQAQSSP 821


>SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)
          Length = 873

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 268 DHNAVSLELHLKPCEQKLNQRQESVDSAFQETITQAIKVCRD 309
           D  +VSL +      +K+N  Q   D AFQ+   +A +VC D
Sbjct: 700 DQRSVSLAIKYAAGNRKMNLAQRLNDLAFQKAQEEAEEVCDD 741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,805
Number of Sequences: 59808
Number of extensions: 589901
Number of successful extensions: 1266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 10
length of query: 404
length of database: 16,821,457
effective HSP length: 84
effective length of query: 320
effective length of database: 11,797,585
effective search space: 3775227200
effective search space used: 3775227200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)