Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (404 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051714-1|AAK93138.1|  442|Drosophila melanogaster LD24865p pro...   239   4e-63
AE014296-603|AAF47741.2|  442|Drosophila melanogaster CG12034-PA...   239   4e-63
AE014297-3861|AAF56516.2|  308|Drosophila melanogaster CG5878-PA...    33   0.93 
AY069547-1|AAL39692.1|  545|Drosophila melanogaster LD27406p pro...    29   8.7  
AE013599-1859|AAF58269.2|  545|Drosophila melanogaster CG8531-PA...    29   8.7  

>AY051714-1|AAK93138.1|  442|Drosophila melanogaster LD24865p
           protein.
          Length = 442

 Score =  239 bits (586), Expect = 4e-63
 Identities = 118/290 (40%), Positives = 179/290 (61%), Gaps = 11/290 (3%)

Query: 5   LMLLLRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSY 64
           L L + GIP VS +++ R +AI   L   +++IV LQEVW+++D   L++  + VLP+S+
Sbjct: 9   LTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQEDSELLQKGTEAVLPHSH 68

Query: 65  YFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKFGERLIN 124
           YF+SGV+G+GL V SK+ I    FH W +NGY H+I H DWFGGKGVGLCRI  G ++++
Sbjct: 69  YFHSGVMGAGLLVLSKYPILGTLFHAWSVNGYFHRIQHADWFGGKGVGLCRILVGGQMVH 128

Query: 125 VYCTHLHAEY-HEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKII 183
           +Y  HLHAEY + +D Y  HRV+QA+ TA+F++ T   + + ILAGDLN  P D+SYK++
Sbjct: 129 LYNAHLHAEYDNANDEYKTHRVIQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVL 188

Query: 184 SQLPSLLDPYNMKFEGTNPLIAKASGTSDNLNNSYSDPKQVKAYPEGKRIDHILFHTNHS 243
                +LD  +          + +  T++  +NSY+  +  +  P G RIDHI       
Sbjct: 189 LYTSKMLDSCD----------SDSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDH 238

Query: 244 WEARVVNFGNPLPDRVPEQQFSYSDHNAVSLELHLKPCEQKLNQRQESVD 293
             A +  +  P P+RVP ++FS+SDH AV  +L L   E +  +   +++
Sbjct: 239 VNAEIAEYKLPFPERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIE 288


>AE014296-603|AAF47741.2|  442|Drosophila melanogaster CG12034-PA
           protein.
          Length = 442

 Score =  239 bits (586), Expect = 4e-63
 Identities = 118/290 (40%), Positives = 179/290 (61%), Gaps = 11/290 (3%)

Query: 5   LMLLLRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSY 64
           L L + GIP VS +++ R +AI   L   +++IV LQEVW+++D   L++  + VLP+S+
Sbjct: 9   LTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQEDSELLQKGTEAVLPHSH 68

Query: 65  YFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKFGERLIN 124
           YF+SGV+G+GL V SK+ I    FH W +NGY H+I H DWFGGKGVGLCRI  G ++++
Sbjct: 69  YFHSGVMGAGLLVLSKYPILGTLFHAWSVNGYFHRIQHADWFGGKGVGLCRILVGGQMVH 128

Query: 125 VYCTHLHAEY-HEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKII 183
           +Y  HLHAEY + +D Y  HRV+QA+ TA+F++ T   + + ILAGDLN  P D+SYK++
Sbjct: 129 LYNAHLHAEYDNANDEYKTHRVIQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVL 188

Query: 184 SQLPSLLDPYNMKFEGTNPLIAKASGTSDNLNNSYSDPKQVKAYPEGKRIDHILFHTNHS 243
                +LD  +          + +  T++  +NSY+  +  +  P G RIDHI       
Sbjct: 189 LYTSKMLDSCD----------SDSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDH 238

Query: 244 WEARVVNFGNPLPDRVPEQQFSYSDHNAVSLELHLKPCEQKLNQRQESVD 293
             A +  +  P P+RVP ++FS+SDH AV  +L L   E +  +   +++
Sbjct: 239 VNAEIAEYKLPFPERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIE 288


>AE014297-3861|AAF56516.2|  308|Drosophila melanogaster CG5878-PA
           protein.
          Length = 308

 Score = 32.7 bits (71), Expect = 0.93
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 158 TSSPADVSILAGDLNTAPGDLSYKIISQ-LPSLLDPYNMKFEGTN-----PLIAKASGTS 211
           T + +++S+  G +  +PG L +KI +  L  L   YN    GTN       + K    +
Sbjct: 156 TGAESNISVACGVMKMSPGGLGHKIATMCLRDLEANYNANKWGTNGPGVITRVVKKQCNT 215

Query: 212 DNLNNSYSDPKQVKAY 227
           DN+ +  ++PK+   +
Sbjct: 216 DNIKSVINNPKRCNGF 231


>AY069547-1|AAL39692.1|  545|Drosophila melanogaster LD27406p
           protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 119 GERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGD 177
           G   INV  T + A Y  DD  + H  + + S A+ ++   +  D+ I++G+L ++ G+
Sbjct: 128 GNITINVNATEIFAPY--DDSEMPHVEIGSMSIAQSIEAPITRKDMIIMSGNLYSSNGN 184


>AE013599-1859|AAF58269.2|  545|Drosophila melanogaster CG8531-PA
           protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 119 GERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGD 177
           G   INV  T + A Y  DD  + H  + + S A+ ++   +  D+ I++G+L ++ G+
Sbjct: 128 GNITINVNATEIFAPY--DDSEMPHVEIGSMSIAQSIEAPITRKDMIIMSGNLYSSNGN 184


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,262,340
Number of Sequences: 52641
Number of extensions: 915426
Number of successful extensions: 2084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 24,830,863
effective HSP length: 87
effective length of query: 317
effective length of database: 20,251,096
effective search space: 6419597432
effective search space used: 6419597432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)