GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (404 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   5.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   9.0  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 17  KNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYL 52
           K   ++Y   S+  LK   NI+ L ++W  + YL +
Sbjct: 179 KGLGKQYNIASSKTLKLSINIISLVQLWIFQLYLLI 214


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 369 IEMNSLKAGLNALENFIQTRNDTKPEDINKEDV 401
           + ++   +G+++L N    + + KP D+N  D+
Sbjct: 468 VNLSETPSGISSLLNLDNQQLELKPIDLNSGDL 500


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 115 RIKFGERLINVYCTHLHAEYHEDDMYLA 142
           + KFG+ LIN+Y  + + +  E + Y++
Sbjct: 112 KAKFGKLLINLYTINYNFKESERNDYVS 139


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,452
Number of Sequences: 317
Number of extensions: 4763
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 404
length of database: 114,650
effective HSP length: 58
effective length of query: 346
effective length of database: 96,264
effective search space: 33307344
effective search space used: 33307344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)