GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    32   0.71 
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    31   2.2  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     30   3.8  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    30   3.8  
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267...    29   6.6  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    29   8.8  

>08_02_1620 -
           28288152-28288353,28288469-28288557,28288634-28288828,
           28289082-28289423,28290227-28291672,28292590-28292666,
           28293160-28294509,28295921-28296029,28296896-28297007,
           28297800-28297957
          Length = 1359

 Score = 32.3 bits (70), Expect = 0.71
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 158 TSSPADVSILAGDLNTAPGDLSYKIISQLPSLLDPYNMKFEGTNPLIAKASGTSDNLNNS 217
           +S+  D +   G   T  GD   +    + +L D Y   F   N L  K S    +++N 
Sbjct: 575 SSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQY---FPELNDLYNKISLKLQHVDNM 631

Query: 218 YSDPKQVKAYPEGKRIDHILFHTNHSWEARVVNFGNPLPDRVP 260
               K  + Y + K    +L  T H  +    N    L D++P
Sbjct: 632 VPPQKPTEQYEKMKNFKLMLERTMHVLQLNKGNIQPALRDKIP 674


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 222 KQVKAYPEGKRIDHILFHTNHSWEARVVNFGNP 254
           +Q + + +G++ID    H+NHS+     N+ NP
Sbjct: 508 QQSQLHEKGRQIDRSAVHSNHSYRKEQDNYSNP 540


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 125 VYCTHLHAE-YHEDDMY-LAHRVLQAYSTAEFVKLTSSPA 162
           V   H+  + +H  D+Y + H +LQA+S    +KL  SPA
Sbjct: 274 VQAAHIRIKGHHASDIYQVGHAILQAFSEYSLLKLPFSPA 313


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 163 DVSILAGDLNTAPGDLSYKIIS-QLPSLLDPYNMKFEGTNPLIAKAS 208
           D+ +L+ D  +   +L+Y+++  QLP   D Y+  F  TN ++  AS
Sbjct: 783 DIYMLSSDECSDTDNLTYQLMEEQLPVFKDEYDRDFSYTNDILGSAS 829


>03_05_0829 +
           28025760-28025846,28026366-28026473,28026721-28026752,
           28026823-28026873,28027528-28027589,28027663-28027924,
           28028634-28028899,28029138-28029232,28029772-28029948
          Length = 379

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 59  VLPYSYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIH 101
           VL Y Y      L SG+ +F+KWV+   +F ++P    +  IH
Sbjct: 8   VLTYLYLLIYVCLSSGVILFNKWVLSPKYF-KFPFPITLTMIH 49


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 120 ERLINVYCTHLHAEYHEDDMYL 141
           +R+I  Y  HL A++H+DD+ L
Sbjct: 37  DRIIAFYLAHLAADHHDDDLLL 58


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,368
Number of Sequences: 37544
Number of extensions: 517734
Number of successful extensions: 1077
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 6
length of query: 404
length of database: 14,793,348
effective HSP length: 84
effective length of query: 320
effective length of database: 11,639,652
effective search space: 3724688640
effective search space used: 3724688640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)