Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
(404 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 201 6e-52
AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical ... 35 0.12
AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical... 32 0.63
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 32 0.83
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 30 2.5
U23521-5|AAC46813.2| 250|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z82272-5|CAB05220.1| 341|Caenorhabditis elegans Hypothetical pr... 29 7.8
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 201 bits (491), Expect = 6e-52
Identities = 126/395 (31%), Positives = 203/395 (51%), Gaps = 18/395 (4%)
Query: 3 INLMLLLRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPY 62
+N L + P+ S ++ R I Y++ ++IV LQE+WS D++ L E + +V PY
Sbjct: 44 LNAWCLPQPWPIGSTDRVHRLNKIGQYMIDELYDIVGLQELWSYYDFVRLSEQVSSVYPY 103
Query: 63 SYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKF-GER 121
+YF+SG GSG+CVFS+ I +++ LNG+ H IH GDWFGGK VGL I+ G+
Sbjct: 104 FHYFHSGFTGSGVCVFSRHPIVSTLTNRYSLNGFAHHIHRGDWFGGKVVGLTEIEIDGDL 163
Query: 122 LINVYCTHLHAEY-HEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSY 180
+N Y THLHAEY E+D+YL HR QA+ A+FV+ T+ ADV I+ GDLN P DL +
Sbjct: 164 RVNFYTTHLHAEYDRENDLYLPHRTAQAFELAQFVRHTARGADVVIVTGDLNMEPCDLGF 223
Query: 181 KIISQLPSLLDPYNMKFEGTNP----------LIAKASGTSDNLNNSYSDPKQVKAYPEG 230
++I L D + M E N IAK GT D +N Y+ + +K +
Sbjct: 224 RLILSHAKLFDAWRMSHEVENEDSEGELLKFRGIAK-GGTCDRPDNCYT-KRALKNVDDS 281
Query: 231 KRIDHILFHTNHSWEARVVNFGNPLPDRVPEQQFSYSDHNAVSLELHLKPCEQKLNQRQE 290
KRID++LF + ++ L +++P + +YSDH V L ++ +++
Sbjct: 282 KRIDYMLFKSGRC-NVKLEECEITL-NQIPGEDLNYSDH--VGLRARFTIDDRFRHEKSV 337
Query: 291 SVDSAFQETITQAIKVCRDATTNXXXXXXXXXXXXXXIFMFLLGSVGFWPNFLIYDVLKL 350
+ + + +AI + + +LGS+ F + + VL+
Sbjct: 338 NTWEPNRPLLIEAIGLVAGGERRARTDRIFFFILAVICLILILGSLFFEVFPMGFAVLRF 397
Query: 351 LITALCFYNLVMGSLWNQIEMNSLKAGLNALENFI 385
+T + + + G + +E +LKA A++ +
Sbjct: 398 ALTVVGVFFVWQGLIGLTLERKALKAAKQAIQQIL 432
>AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical
protein Y34B4A.8 protein.
Length = 604
Score = 34.7 bits (76), Expect = 0.12
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 121 RLINVYCTHLHAEYHED---DMYLAHRVLQAYST-AEFVKLTSSPAD-VSILAGDLNTAP 175
R+IN Y T LHAE E +M + RV + + +E+ K + D +++++ DL A
Sbjct: 94 RVINAYGTVLHAEVDEKVKLEMAMERRVYEELAPFSEYEKNVNKLKDKLNLVSTDLEIAQ 153
Query: 176 GDLSYKIISQLPSLLDPYNMKFEG 199
DL + LD MK+EG
Sbjct: 154 KDLEKENSMTHQESLDAIQMKYEG 177
>AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical
protein F45C12.16 protein.
Length = 506
Score = 32.3 bits (70), Expect = 0.63
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 124 NVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSY 180
+VY +LHA Y E + L Y L + + I+ GDL GD +Y
Sbjct: 325 DVYFKNLHANYCEGKEQYVKQALDMYEICWLTTLRALKPNCKIIGGDLKIQSGDEAY 381
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.83
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 337 GFWPNFLIYDVLKLLITALCFYNLVMGSLWNQIEMNSLKAGLN 379
GF P ++Y + T FY+ V+GS W M LK ++
Sbjct: 178 GFDPTEVVYQARNWMFTIATFYSPVIGSYWKHQAMKMLKVHMS 220
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 259 VPEQQFSYSDHNAVSLELHLKPCEQKLNQRQESVDSAFQ 297
VP+Q+ + SD N KP E++L +R+E + S F+
Sbjct: 107 VPDQEIAKSDDNFFRSMYGPKPSEKELEERREHIPSHFR 145
>U23521-5|AAC46813.2| 250|Caenorhabditis elegans Hypothetical
protein F41C3.6 protein.
Length = 250
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 136 EDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKIISQLPSLL 190
E+D +LAH+ ++ YS+ FV L SS IL +++ ++Y ++ + SLL
Sbjct: 39 ENDYFLAHQKVRLYSSHNFVMLYSSS---KILMMEIDDLEKMITYDDVADVVSLL 90
>Z82272-5|CAB05220.1| 341|Caenorhabditis elegans Hypothetical
protein F55G11.8 protein.
Length = 341
Score = 28.7 bits (61), Expect = 7.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 48 DYLYLKENLKNVLPYSY--YFYSGVLGSGLCVFS 79
D Y K LKN P S+ YF V+ SG VF+
Sbjct: 305 DKTYTKTQLKNAFPLSFGGYFVQFVVSSGKAVFT 338
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.137 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,351
Number of Sequences: 27539
Number of extensions: 462411
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 7
length of query: 404
length of database: 12,573,161
effective HSP length: 83
effective length of query: 321
effective length of database: 10,287,424
effective search space: 3302263104
effective search space used: 3302263104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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