GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001138-TA|BGIBMGA001138-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (404 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.87 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.87
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 48 DYLYLKENLKNVLPYSYYFY 67
          D  +  E + NVL + YYFY
Sbjct: 13 DRFFFIEGMTNVLDFDYYFY 32


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 9  LRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKEN 55
          ++GIPV   + ++RYE I   + K E ++V +     E  YL +K+N
Sbjct: 55 VKGIPVSCISGRDRYECIEK-VGKKEADVVAVD---PEDMYLAVKDN 97


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 9  LRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKEN 55
          ++GIPV   + ++RYE I   + K E ++V +     E  YL +K+N
Sbjct: 55 VKGIPVSCISGRDRYECIEK-VGKKEADVVAVD---PEDMYLAVKDN 97


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 9  LRGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKEN 55
          ++GIPV   + ++RYE I   + K E ++V +     E  YL +K+N
Sbjct: 55 VKGIPVSCISGRDRYECIEK-VGKKEADVVAVD---PEDMYLAVKDN 97


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 59  VLPYSYYFYSGVLGSGLCVFSK-WVIQDVF-FHQWPLNG 95
           ++ Y Y+ Y G+L  G+ +  K   +Q ++ F ++ +NG
Sbjct: 122 LIAYIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNG 160


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,657
Number of Sequences: 429
Number of extensions: 5027
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 140,377
effective HSP length: 59
effective length of query: 345
effective length of database: 115,066
effective search space: 39697770
effective search space used: 39697770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)