Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001137-TA|BGIBMGA001137-PA|IPR000398|Thymidylate
synthase
         (253 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate s...   365   e-101
AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical...   365   e-101
U50068-7|AAB37735.1|  479|Caenorhabditis elegans Hypothetical pr...    31   1.0  

>AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate
           synthase protein.
          Length = 315

 Score =  365 bits (898), Expect = e-101
 Identities = 163/251 (64%), Positives = 189/251 (75%)

Query: 3   RYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 62
           +Y L N T+PLLT KRV+ +GV+EELLW ISGSTD K L  K V IW+ NG R FLDNLG
Sbjct: 65  KYCLRNGTIPLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNVKIWEKNGDRAFLDNLG 124

Query: 63  FTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAW 122
           FT REEGDLGPVYGFQWRH GAKY+DC TDY+GQG+DQL  VI  IK  P  RR+++ AW
Sbjct: 125 FTSREEGDLGPVYGFQWRHFGAKYVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAW 184

Query: 123 NSSDLKKMALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHVTG 182
           N SDL +M LPPCH + QFYV +G+LSC LYQRS DMGLGVPFN+ASY LLTHMIA V G
Sbjct: 185 NPSDLGQMVLPPCHTMCQFYVDNGELSCQLYQRSGDMGLGVPFNLASYGLLTHMIAKVCG 244

Query: 183 YQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYK 242
            + G  +HT GD HVY NH++ LKIQL REP  FP + F R + SIDDF  +   + DYK
Sbjct: 245 LKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKIRFTRDVASIDDFTSDMIALDDYK 304

Query: 243 PHPKIEMEMAV 253
            HPKI M+MAV
Sbjct: 305 CHPKIPMDMAV 315


>AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.4 protein.
          Length = 312

 Score =  365 bits (898), Expect = e-101
 Identities = 163/251 (64%), Positives = 189/251 (75%)

Query: 3   RYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 62
           +Y L N T+PLLT KRV+ +GV+EELLW ISGSTD K L  K V IW+ NG R FLDNLG
Sbjct: 62  KYCLRNGTIPLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNVKIWEKNGDRAFLDNLG 121

Query: 63  FTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAW 122
           FT REEGDLGPVYGFQWRH GAKY+DC TDY+GQG+DQL  VI  IK  P  RR+++ AW
Sbjct: 122 FTSREEGDLGPVYGFQWRHFGAKYVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAW 181

Query: 123 NSSDLKKMALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHVTG 182
           N SDL +M LPPCH + QFYV +G+LSC LYQRS DMGLGVPFN+ASY LLTHMIA V G
Sbjct: 182 NPSDLGQMVLPPCHTMCQFYVDNGELSCQLYQRSGDMGLGVPFNLASYGLLTHMIAKVCG 241

Query: 183 YQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYK 242
            + G  +HT GD HVY NH++ LKIQL REP  FP + F R + SIDDF  +   + DYK
Sbjct: 242 LKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKIRFTRDVASIDDFTSDMIALDDYK 301

Query: 243 PHPKIEMEMAV 253
            HPKI M+MAV
Sbjct: 302 CHPKIPMDMAV 312


>U50068-7|AAB37735.1|  479|Caenorhabditis elegans Hypothetical
           protein C01G5.3 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 189 IHTTGDTHVYLNHIEPLKIQLQREPKQF-PTLEFARKIESI 228
           +HT  +T + LN I+PL   ++R+   F P L F+  I S+
Sbjct: 258 LHTIKNTKLVLNEIQPLSEMMKRDDIHFTPELVFSNTIRSL 298


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,794,500
Number of Sequences: 27539
Number of extensions: 292431
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 3
length of query: 253
length of database: 12,573,161
effective HSP length: 80
effective length of query: 173
effective length of database: 10,370,041
effective search space: 1794017093
effective search space used: 1794017093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)