GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001137-TA|BGIBMGA001137-PA|IPR000398|Thymidylate
synthase
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...   346   2e-96
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.0  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    27   2.6  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   4.6  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    26   4.6  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score =  346 bits (850), Expect = 2e-96
 Identities = 158/261 (60%), Positives = 198/261 (75%), Gaps = 10/261 (3%)

Query: 3   RYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 62
           R+SL NNTLPLLT KRVF RGV+EELLW I G T++  L+ KG+HIWD NGSR FLD+ G
Sbjct: 365 RFSLRNNTLPLLTTKRVFLRGVLEELLWFIHGDTNANHLSEKGIHIWDGNGSREFLDSRG 424

Query: 63  FTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAW 122
            TDR+ GDLGP+YGFQWRH GA+Y+DC TDYT +G+DQL  VI ++K NP DRR+++ AW
Sbjct: 425 LTDRKVGDLGPIYGFQWRHFGAQYVDCDTDYTNKGVDQLAQVISTLKLNPYDRRIILSAW 484

Query: 123 NSSDLKKMALPPCHCLAQFYVAD-----GK--LSCLLYQRSADMGLGVPFNIASYSLLTH 175
           N   + +MALPPCH   QFYV++     GK  LS ++YQRSADMGLGVPFNIASYSLLTH
Sbjct: 485 NPLAIPEMALPPCHIFCQFYVSEPCKPGGKPQLSSMMYQRSADMGLGVPFNIASYSLLTH 544

Query: 176 MIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEF---ARKIESIDDFK 232
           MIAH+ GY+A EF+H  GD H+Y +H+E L+ QL+R PK FP L F   A+ I SID F 
Sbjct: 545 MIAHMCGYEAAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFS 604

Query: 233 YEDFIIKDYKPHPKIEMEMAV 253
            +DF ++ Y P+  I+M+M+V
Sbjct: 605 VDDFAVEGYNPYGPIKMKMSV 625


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 1  MQRYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVH----IWDAN 52
          ++ YS  NN L L+T   +F + V  +    +S  TD   +A          WDAN
Sbjct: 37 LEVYSYENNRLCLITSANIFAKIVNVKAFKPVSSPTDHIIVATDSFRYFTLFWDAN 92


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 107 SIKNNPADRRMLICAWNSSDLKKMAL 132
           S+ N+ A + ML C WNS+ L K+ +
Sbjct: 100 SVDNDGAVQAMLNCTWNSNVLSKVQM 125


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 121 AWNSSDLKKMALPPCHCLAQFYVAD 145
           ++N SD++ + L PCH L + +V++
Sbjct: 383 SFNVSDMQTLGLNPCHSLDKSFVSE 407


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 178 AHVTGYQAGEFI--HTTGDTHVYLNHIEPLKIQLQREPK 214
           A +T ++ G F   +TTG +  YL H+E ++I   R  K
Sbjct: 466 AELTEFEVGLFTGEYTTGASKEYLVHLEQMRIANNRARK 504


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 107 SIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFYVADGKLSCL 151
           ++ +N     +L+     + LK   L  C+C+  F     K+SCL
Sbjct: 259 ALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCL 303


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,190
Number of Sequences: 5004
Number of extensions: 54113
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)