Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001137-TA|BGIBMGA001137-PA|IPR000398|Thymidylate
synthase
(253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 343 8e-95
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 276 1e-74
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 30 2.1
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 29 2.8
04_04_0688 - 27288308-27288366,27288475-27288595,27288888-272889... 29 2.8
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 29 3.6
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 4.8
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 28 6.4
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 28 6.4
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 8.4
05_05_0266 - 23694466-23696787,23696885-23697187 28 8.4
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 343 bits (843), Expect = 8e-95
Identities = 160/260 (61%), Positives = 188/260 (72%), Gaps = 10/260 (3%)
Query: 3 RYSLHNNTLPLLTPKR---------VFTRGVIEELLWMISGSTDSKALAAKGVHIWDANG 53
R++L N+ PLLT K+ VF RGV+EELLW ISGST +K L KG+HIWD N
Sbjct: 272 RFNLRNS-FPLLTTKKLAPLKLYNKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNA 330
Query: 54 SRNFLDNLGFTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPA 113
SR +LD++G REEGDLGPVYGFQWRH GA+Y D DYTG+G DQL VID IKNNP
Sbjct: 331 SREYLDSVGLAHREEGDLGPVYGFQWRHFGAEYTDMHADYTGKGFDQLMDVIDKIKNNPD 390
Query: 114 DRRMLICAWNSSDLKKMALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLL 173
DRR+++ AWN SDLKKMALPPCH AQFYV G+LSC +YQRSADMGLGVPFNIASYSLL
Sbjct: 391 DRRIILSAWNPSDLKKMALPPCHMFAQFYVESGELSCQMYQRSADMGLGVPFNIASYSLL 450
Query: 174 THMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKY 233
T+MIAHV G GEF+H GD HVY H+ L+ Q+Q+ PK FP L+ + ID F
Sbjct: 451 TYMIAHVCGLSPGEFVHVIGDAHVYRTHVRALEEQIQKLPKPFPVLKINPLKKDIDSFVA 510
Query: 234 EDFIIKDYKPHPKIEMEMAV 253
DF + Y PH KIEM+MA+
Sbjct: 511 SDFKLVGYDPHQKIEMKMAI 530
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 276 bits (677), Expect = 1e-74
Identities = 138/251 (54%), Positives = 166/251 (66%), Gaps = 26/251 (10%)
Query: 3 RYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 62
R++L N PLLT KRVF RGV+EELLW ISGST++K L KG+HIWD N SR +LD
Sbjct: 245 RFNLRRN-FPLLTTKRVFWRGVLEELLWFISGSTNAKVLQEKGIHIWDGNASRQYLD--- 300
Query: 63 FTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAW 122
+Y D DY G+G DQL VID IKNNP DRR+++ AW
Sbjct: 301 ----------------------RYTDMHADYVGKGFDQLMDVIDKIKNNPDDRRIILSAW 338
Query: 123 NSSDLKKMALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHVTG 182
N +DLKKMALPPCH AQFYV +G+LSC +YQRSADMGLGVPFNIASYSLLT MIA V
Sbjct: 339 NPTDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAQVCD 398
Query: 183 YQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYK 242
G+F+H GD HVY H+E L+ Q++++PK FP L+ + ID F DF + Y
Sbjct: 399 LSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDIDSFVTSDFKLVRYD 458
Query: 243 PHPKIEMEMAV 253
PH KIEM+MAV
Sbjct: 459 PHHKIEMKMAV 469
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 70 DLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLI 119
D+ P+ W+ G + D TD+ G G L+++I +N P + L+
Sbjct: 152 DIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSFQALL 201
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 12 PLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 56
P+ T K + LL +++ STD+K ++ G+HI ++ S N
Sbjct: 535 PIATQKVAVDNHASQHLLSLLTKSTDNKGSSSFGLHIGSSDRSHN 579
>04_04_0688 -
27288308-27288366,27288475-27288595,27288888-27288942,
27289041-27289156,27289548-27289616,27289975-27290084,
27290222-27290306
Length = 204
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 78 QWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWN 123
QW+ G + D TD+ G G L++++ KN + L+C N
Sbjct: 111 QWKEMGWQGKDPSTDFRGGGFISLENLLYFAKNYTKSFQELLCKQN 156
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 142 YVADGKLSCLLYQRSADMGLGVPFNIASYSLLTH-MIAHVTGYQAGEFIHTTG 193
Y GKL L R + GV +A+Y+LL H + G +A E + G
Sbjct: 601 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 653
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 130 MALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHV 180
MALP C +A ++ ++S ++Q S + LGV ++ ++ +L ++A +
Sbjct: 159 MALPFCIGIATSFIFRHQVSRNVHQTSFLLFLGVALSVTAFPVLARILAEI 209
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 84 AKYIDCQTDYTGQGIDQLQSVIDSIKNNPA 113
A+ D Y G+ +DQLQSV+ S++ P+
Sbjct: 566 AQVFDRLRPYAGKWVDQLQSVLWSLRTTPS 595
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 90 QTDYTGQGI--DQLQSVIDSIK-NNPADRRMLICA-----WNSSDLKKMALPPCHCLAQF 141
+ Y G+G+ D+L + ++ NPA I A W S L M + C +A F
Sbjct: 411 EVGYDGEGLENDRLDQATELLEYENPAAAAKAIVAMVKSLWPSIKLHLMEILACFSVAAF 470
Query: 142 YVADGKLSCLLYQRS 156
+A L C +QRS
Sbjct: 471 AIAAAMLKC--FQRS 483
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 14 LTPKRVFT-RGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLG 72
LT +++T G++E + + GS D A G HI G + ++++ D ++
Sbjct: 526 LTEYQIYTLHGILENAPYNLHGSNDFAVGAVDGTHIPVTVGVDSAIEHMNRHDETTKNVL 585
Query: 73 PVYGFQWR 80
+ GF R
Sbjct: 586 TIVGFDGR 593
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 130 MALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHV 180
MALP C A ++ ++S ++Q S + LGV ++ ++ +L ++A V
Sbjct: 169 MALPFCIGTATSFIFRHQVSKNVHQASFLLFLGVALSVTAFPVLARILAEV 219
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,948,927
Number of Sequences: 37544
Number of extensions: 337018
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 12
length of query: 253
length of database: 14,793,348
effective HSP length: 80
effective length of query: 173
effective length of database: 11,789,828
effective search space: 2039640244
effective search space used: 2039640244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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