GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001137-TA|BGIBMGA001137-PA|IPR000398|Thymidylate
synthase
         (253 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15236| Best HMM Match : Thymidylat_synt (HMM E-Value=0)            326   8e-90
SB_52147| Best HMM Match : EGF (HMM E-Value=0)                         30   1.6  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         29   2.8  
SB_56405| Best HMM Match : Fels1 (HMM E-Value=6.5)                     28   8.6  

>SB_15236| Best HMM Match : Thymidylat_synt (HMM E-Value=0)
          Length = 300

 Score =  326 bits (802), Expect = 8e-90
 Identities = 155/251 (61%), Positives = 182/251 (72%), Gaps = 24/251 (9%)

Query: 3   RYSLHNNTLPLLTPKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 62
           R+SL +   PLLT KRVF RGV EELLW + G T++K LA K +HIWDANGSR FLD  G
Sbjct: 74  RFSLRDGVFPLLTTKRVFWRGVAEELLWFVKGCTNAKVLADKNIHIWDANGSRGFLDRQG 133

Query: 63  FTDREEGDLGPVYGFQWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAW 122
            + REEGDLGPVYGFQWRH GAKY+D  TDYTGQG+DQL  VID IKNNP DRR+++ AW
Sbjct: 134 LSHREEGDLGPVYGFQWRHFGAKYVDMHTDYTGQGVDQLAQVIDKIKNNPDDRRIIMLAW 193

Query: 123 NSSDLKKMALPPCHCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHVTG 182
           N SD+  MALPPCH   QFYVA+G+LSC LYQRS DMGLGVPFNIASYSLLT+MIAHV G
Sbjct: 194 NPSDIPLMALPPCHAFVQFYVANGELSCQLYQRSGDMGLGVPFNIASYSLLTYMIAHVCG 253

Query: 183 YQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYK 242
                                   ++L+REP+ FP+L   R+++ ID F ++DF I  YK
Sbjct: 254 ------------------------LKLKREPRAFPSLVIKRQVDDIDQFTFDDFEIVGYK 289

Query: 243 PHPKIEMEMAV 253
           PHPKI+MEMAV
Sbjct: 290 PHPKIKMEMAV 300


>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
          Length = 364

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 80  RHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNP 112
           + +G+ Y +C T YTGQ  D   ++ID+ ++NP
Sbjct: 186 QQTGSFYCECLTGYTGQSCD---TMIDACQSNP 215



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 80  RHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNPAD 114
           + +G+ Y +C   YTGQ  D   ++ID+ ++NP +
Sbjct: 149 QQTGSFYCECLAGYTGQSCD---TMIDACQSNPCN 180


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 199 LNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYKPH 244
           LN I  L+IQL++  K    LE+  + + +     ED +IK  + H
Sbjct: 270 LNKISQLEIQLEKVGKSKAQLEYQHQQQVLKTTSLEDELIKSQRAH 315


>SB_56405| Best HMM Match : Fels1 (HMM E-Value=6.5)
          Length = 119

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 136 HCLAQFYVADGKLSCLLYQRSADMGLGVPFNIASYSLLTHMIAHVTGYQAG--EFIHTTG 193
           +C+    +  G LSC L+  SA  G       A ++L   ++A+  G   G  E +H  G
Sbjct: 7   NCVRSLPLQSGNLSCQLHNESATRG---ERRFAYWALAECILAYYVGTDEGVSEVLHVAG 63

Query: 194 DTHVY 198
           +  ++
Sbjct: 64  EKRLH 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,196,622
Number of Sequences: 59808
Number of extensions: 382404
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 7
length of query: 253
length of database: 16,821,457
effective HSP length: 80
effective length of query: 173
effective length of database: 12,036,817
effective search space: 2082369341
effective search space used: 2082369341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)