Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
         (108 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05230.1 68416.m00571 signal peptidase subunit family protein...    80   3e-16
At5g27430.1 68418.m03274 signal peptidase subunit family protein...    76   4e-15
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    28   1.5  
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    27   2.0  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    27   2.0  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    27   2.0  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    25   8.1  
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    25   8.1  

>At3g05230.1 68416.m00571 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 3   LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
           L +LF WN KQ+F+++ AEY TP N LNQV LWD II   E+A    + ++ KY F D G
Sbjct: 69  LQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRIQ-VSNKYRFIDQG 127

Query: 63  NGLKGHSNVTLTLSWNIIPNAG 84
             L+G  +  LTL W+++P  G
Sbjct: 128 QNLRG-KDFNLTLHWHVMPKTG 148


>At5g27430.1 68418.m03274 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 3   LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
           L +LF WN KQ+F ++ AEY T  N LNQV LWD II   E+A   +  ++ KY F D G
Sbjct: 69  LQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDAIIPEKEHAKF-WIQISNKYRFIDQG 127

Query: 63  NGLKGHSNVTLTLSWNIIPNAG 84
           + L+G  +  LTL W+++P  G
Sbjct: 128 HNLRG-KDFNLTLHWHVMPKTG 148


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 17  YLTAEYITPSNELNQVVLWDKIILRGE 43
           YLTA Y +P      + LWDK++L G+
Sbjct: 651 YLTAHYQSPRQ---MICLWDKLVLTGK 674


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 28  ELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLS-WNIIPNAGLL 86
           E   +V  +K++  GE  V   ++M++ +  +  G G    S +T  L+ W+  P  G +
Sbjct: 709 EYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAI 768

Query: 87  PNIQA 91
            ++ A
Sbjct: 769 GDLLA 773


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 44  NAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLL-PNIQA 91
           NA+LD K   T++Y    G    GH+ V L +  N+ P   LL P + A
Sbjct: 313 NALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNA 361


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 44  NAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLL-PNIQA 91
           NA+LD K   T++Y    G    GH+ V L +  N+ P   LL P + A
Sbjct: 313 NALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNA 361


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 16  LYLTAEYITPSNELNQVVLWDKI--ILRGENAVLDFKNMN 53
           L  +A+Y+   +++ ++V +DK   I RGE  V+DFK+++
Sbjct: 382 LIKSADYLDTLSKI-KIVAFDKTGTITRGEFIVIDFKSLS 420


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 2   ILSNLFNWNVKQLFLYLTAEYI----TPSNELNQVVLWDKIILRGENAVLDFKNMNTKYY 57
           I ++ F W ++    +L   Y      PS +LN V         G ++ L   ++     
Sbjct: 519 IKTDPFLWKLRIRIRFLNTVYFGGFCEPSKDLNLVCTMHANCCFGLDSKLH--DLRIMLQ 576

Query: 58  FWDDGNGLKGHSNVTLTLSWNIIPNAGL--LPNIQALGQHSFKFPIEYTQ 105
            W D   L  HSN +   +W++  N  L  L  + +  +   + P E TQ
Sbjct: 577 DWRDFKSLPLHSNQSSGFTWSVPQNCSLDSLRPVDSKDEEESEPPGESTQ 626


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,776
Number of Sequences: 28952
Number of extensions: 107199
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 12,070,560
effective HSP length: 71
effective length of query: 37
effective length of database: 10,014,968
effective search space: 370553816
effective search space used: 370553816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)