Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
(108 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 63 8e-12
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.49
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 2.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 2.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 3.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 4.6
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 24 4.6
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 24 6.0
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 23 8.0
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 23 8.0
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 63.3 bits (147), Expect = 8e-12
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 3 LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTK---YYFW 59
LS L++WN K + +YL A Y T +E NQVV+WDKI+ E + + K+ + + F
Sbjct: 79 LSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHPFN 138
Query: 60 DDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQTR 107
+ N +G N T TL W + P G L G + F TQ +
Sbjct: 139 EYSNQFEG-KNATYTLHWTVSPKMGFLSWGAGPGSYEIPFHKIITQPK 185
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 0.49
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 80 IPNAGLLPNIQALGQHSFKFP-IEYTQTRV 108
IP A L+P + L S++FP ++Y+QT +
Sbjct: 63 IPRAWLIPFHEFLNNRSYRFPKLDYSQTPI 92
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 2.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 48 DFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQAL 92
D + +TK++ +GL + L LSW + N L I+ L
Sbjct: 462 DSEEKSTKWFLQQIDHGLFPFQSTVLILSWLCVENTVTLKKIKML 506
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 NAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLL 86
+ V +F NT + + + + NV LT SW++ P+ +L
Sbjct: 253 DVVRNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSGEML 295
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 51 NMNTKYYFWDDGNG-----LKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFP 100
N+N++ WD H N ++SW+ + + N +AL + +P
Sbjct: 242 NLNSQIRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSSKNIPKNTEALPNNDSSYP 296
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.2 bits (50), Expect = 4.6
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 5 NLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKY 56
NL N++++ + L + + N+ ++V LW + +L++ T+Y
Sbjct: 816 NLLNYSLENVVLNIFKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRY 867
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 9 WNVKQLFLYLTAEYITPSNELNQVV 33
WNV + F++ +Y+ +N L+ +V
Sbjct: 232 WNVTRDFIHQNPQYLAQNNSLDFIV 256
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 23.8 bits (49), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 51 NMNTKYYFWDDGNGLKGHSNV 71
N N KY F G+ LKG S++
Sbjct: 400 NNNVKYVFLAAGSSLKGQSDL 420
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 56 YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQ 90
Y +W S V L L++ I +AGL PN +
Sbjct: 190 YNYWLSWLSFSKSSPVVLWLTFTRISSAGLSPNAE 224
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 23.4 bits (48), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 43 ENAVLDFKNMNTKYYFWDDGNGL 65
+ A+L +K K YF D+GN +
Sbjct: 584 KKAMLKYKKSADKVYFDDEGNAI 606
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,919
Number of Sequences: 5004
Number of extensions: 22562
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 10
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)
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