Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
(108 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927... 82 1e-16
01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175... 78 2e-15
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 27 2.4
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 27 4.1
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 26 5.5
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 26 7.2
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 26 7.2
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 25 9.6
>09_06_0238 -
21791139-21791264,21791862-21791948,21792713-21792766,
21793199-21793261,21793363-21793410,21793626-21793688
Length = 146
Score = 81.8 bits (193), Expect = 1e-16
Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 3 LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
LS+LF WN KQ+F+++ AEY TP N LNQV LWD II E+A N KY F D G
Sbjct: 48 LSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPSKEHAKFLIHTTN-KYRFIDQG 106
Query: 63 NGLKGHSNVTLTLSWNIIPNAG 84
+ LKG + LT+ W+I+P G
Sbjct: 107 SNLKG-KDFNLTMHWHIMPKTG 127
>01_01_0202 +
1753394-1753667,1753934-1753977,1754105-1754152,
1754940-1755002,1755460-1755513,1756073-1756159,
1756253-1756381
Length = 232
Score = 77.8 bits (183), Expect = 2e-15
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 3 LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
L +LF W+ KQ+F++LTAEY N LNQV LWD II + A L + + +KY D G
Sbjct: 133 LESLFTWSTKQVFVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQVE-VKSKYPLIDQG 191
Query: 63 NGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYT 104
+ L+G V L L W+++P AG++ + F P YT
Sbjct: 192 SSLRG-KKVQLVLHWHVMPKAGVMIR-DRMALSEFNLPDSYT 231
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 71 VTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQTRV 108
+ L SW + L N + LG+H +KFP + V
Sbjct: 129 IALIASWYTLSTCLTLYNKEMLGKHMWKFPAPFLMNTV 166
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 61 DGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALG 93
+ + L GH++ +L+WN P AG P + + G
Sbjct: 13 EAHRLTGHTDRVWSLAWNPSPGAGAGPVLASCG 45
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 42 GENAVLDFKNMNTKYYFWDDGNG 64
GE++ + K ++TK Y WDD G
Sbjct: 3381 GEDSWIQVKPLSTKKYSWDDPYG 3403
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 51 NMNTKYYFWDDGNG-LKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFP 100
+M+ Y D G L+ +S V +L+ NI+ L NI L +H+ FP
Sbjct: 398 DMSKIQYNRDVGKSILESYSRVLESLASNIVARIDDLLNIDELNRHAEHFP 448
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 44 NAVLDFKNMNTKYYFW---DDGNGLKGHS 69
+A+LD KN YY W DGN + S
Sbjct: 418 HAILDIKNRTHAYYTWHRNQDGNAVAADS 446
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 9 WNVKQLFLYLTAEYITPSNELNQVVLWD 36
WN+ L ++ T Y+ +Q+ LWD
Sbjct: 445 WNITTLDVHPTEPYLLSIGSQDQIKLWD 472
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,110
Number of Sequences: 37544
Number of extensions: 122497
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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