GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
         (108 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07)                   28   1.4  
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)                  26   7.5  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     25   9.9  

>SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07)
          Length = 552

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 47  LDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPN 88
           LD KN N + +F++    +    ++  TLS+ I+ N G+L N
Sbjct: 197 LDLKNSNEREFFFEIVRDIANDLDLK-TLSYKILVNVGILTN 237


>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
          Length = 456

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 30  NQVVLWDKIILRGENAVLDFKNMNTKYYF 58
           +Q+V  D+++++GE+A   F  MN   ++
Sbjct: 171 SQMVFQDEVLIQGESAPRPFLTMNNSTFY 199


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM
          E-Value=2.8026e-45)
          Length = 2022

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 17 YLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNT 54
          YL+   I P++ L + +L D+++++  N   +FK + T
Sbjct: 21 YLSLIKIIPTDILTRNLLQDRVLVQKANGFGEFKKLTT 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,663,856
Number of Sequences: 59808
Number of extensions: 136132
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 16,821,457
effective HSP length: 72
effective length of query: 36
effective length of database: 12,515,281
effective search space: 450550116
effective search space used: 450550116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)