GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
         (108 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p pro...   190   4e-49
AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA...   190   4e-49
BT016027-1|AAV36912.1|  897|Drosophila melanogaster RE07945p pro...    27   5.0  
AE014297-2836|ABI31184.1|  897|Drosophila melanogaster CG31201-P...    27   5.0  

>AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p
           protein.
          Length = 179

 Score =  190 bits (462), Expect = 4e-49
 Identities = 82/106 (77%), Positives = 95/106 (89%)

Query: 3   LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
           L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG+NAVLDFKNMNTKYYFWDDG
Sbjct: 74  LTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDG 133

Query: 63  NGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQTRV 108
           NGLK + NV+L LSWNIIPNAGLLP++QA G+H FKFP +Y  + +
Sbjct: 134 NGLKDNRNVSLYLSWNIIPNAGLLPSVQATGKHLFKFPADYATSSI 179


>AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA
           protein.
          Length = 179

 Score =  190 bits (462), Expect = 4e-49
 Identities = 82/106 (77%), Positives = 95/106 (89%)

Query: 3   LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 62
           L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG+NAVLDFKNMNTKYYFWDDG
Sbjct: 74  LTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDG 133

Query: 63  NGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQTRV 108
           NGLK + NV+L LSWNIIPNAGLLP++QA G+H FKFP +Y  + +
Sbjct: 134 NGLKDNRNVSLYLSWNIIPNAGLLPSVQATGKHLFKFPADYATSSI 179


>BT016027-1|AAV36912.1|  897|Drosophila melanogaster RE07945p
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 7   FNWNVKQLFLYLTAEYITPSNELNQVV 33
           FNW  + +FLY +AEY+   NEL  ++
Sbjct: 156 FNWT-RFIFLYESAEYLNILNELTTML 181


>AE014297-2836|ABI31184.1|  897|Drosophila melanogaster CG31201-PB
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 7   FNWNVKQLFLYLTAEYITPSNELNQVV 33
           FNW  + +FLY +AEY+   NEL  ++
Sbjct: 156 FNWT-RFIFLYESAEYLNILNELTTML 181


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,395,231
Number of Sequences: 52641
Number of extensions: 210217
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 24,830,863
effective HSP length: 75
effective length of query: 33
effective length of database: 20,882,788
effective search space: 689132004
effective search space used: 689132004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)