GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
         (108 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical pr...   122   7e-29
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    33   0.057
AF047662-6|AAC04441.1|  185|Caenorhabditis elegans Hypothetical ...    26   6.5  

>L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical
           protein K12H4.4 protein.
          Length = 180

 Score =  122 bits (293), Expect = 7e-29
 Identities = 55/104 (52%), Positives = 70/104 (67%)

Query: 4   SNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDGN 63
           S +FNWNVKQLF+YL AEY +  NE+NQVVLWD+I+ R +  V+D   + +KYYF DDG 
Sbjct: 75  SKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDEIGVKSKYYFLDDGT 134

Query: 64  GLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQTR 107
            L  H NVT  L +N+IPN+G L  +Q+  Q    FP  YT TR
Sbjct: 135 NLLNHKNVTFVLRYNVIPNSGYLRLVQSSDQVVVPFPTTYTTTR 178


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 2   ILSNLFNWNVKQLFLYLTAE----YITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYY 57
           I++N  ++ V  L  Y+T +    ++  S EL + V +  ++  G+N +  F  +N K++
Sbjct: 253 IVANPASFGVSNLEEYMTKQNVLQHVRISIELERKVQF-MVVNGGKNLLTYFTWLNNKFF 311

Query: 58  FWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQ 90
             +DG  L+    V   LS N+ P A  LPN Q
Sbjct: 312 RANDGPALRAEC-VRYVLSMNLDP-AKALPNAQ 342


>AF047662-6|AAC04441.1|  185|Caenorhabditis elegans Hypothetical
          protein T22B2.2 protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 50 KNMNTKYYFWDDGNG-LKGHSNV---TLTLSWNIIPNAGLLPNI 89
          KN ++K +F+ DG G LK  S +   T  + W +I    L P +
Sbjct: 12 KNFSSKLFFFQDGAGALKFDSKLEKFTKIIYWGVITACHLFPAV 55


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,131
Number of Sequences: 27539
Number of extensions: 112334
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 12,573,161
effective HSP length: 71
effective length of query: 37
effective length of database: 10,617,892
effective search space: 392862004
effective search space used: 392862004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)