GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001136-TA|BGIBMGA001136-PA|IPR007653|Signal peptidase 22
kDa subunit
         (108 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   2.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   3.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   5.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   9.9  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 62  GNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 94
           GN +K ++   L +  NI+   G   N+Q  GQ
Sbjct: 347 GNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQ 379


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 12  KQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLD 48
           ++L  Y+    I      N V+LWD  +      +L+
Sbjct: 66  ERLMCYMKCIMIATKAMKNDVILWDFFVKNARMILLE 102


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 12 KQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLD 48
          ++L  Y+    I      N V+LWD  +      +L+
Sbjct: 40 ERLMCYMKCIMIATKAMKNDVILWDFFVKNARMILLE 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 58  FWDDGNG-LKGH-SNVTLTLSWNIIPNAG 84
           F D GN  LK   S V   L W  +PN G
Sbjct: 365 FNDSGNPILKAKPSEVVQILGWKELPNVG 393


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 68 HSNVTLTLSWNIIPNAGLLPNIQALGQHSFKF 99
          H  V   L W    N+ + P I AL    F+F
Sbjct: 40 HPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 68  HSNVTLTLSWNIIPNAGLLPNIQALGQHSFKF 99
           H  V   L W    N+ + P I AL    F+F
Sbjct: 488 HPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 15  FLYLTAEYITPSNELNQVVLWDKII 39
           FLYL   +         + LWD+ +
Sbjct: 204 FLYLNKHFTNSEEAPGNMGLWDQAL 228


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 15  FLYLTAEYITPSNELNQVVLWDKII 39
           FLYL   +         + LWD+ +
Sbjct: 204 FLYLNKHFTNSEEAPGNMGLWDQAL 228


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,401
Number of Sequences: 429
Number of extensions: 1595
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 140,377
effective HSP length: 50
effective length of query: 58
effective length of database: 118,927
effective search space:  6897766
effective search space used:  6897766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)