Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001135-TA|BGIBMGA001135-PA|undefined
(996 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 42 0.003
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 42 0.003
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 34 0.41
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 34 0.54
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 33 0.95
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 33 0.95
At5g42490.1 68418.m05172 kinesin motor family protein contains P... 33 1.3
At3g17100.2 68416.m02182 expressed protein 32 1.7
At3g17100.1 68416.m02181 expressed protein 32 1.7
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 32 2.2
At4g35890.1 68417.m05097 La domain-containing protein contains P... 32 2.2
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ... 31 2.9
At5g06110.1 68418.m00679 DNAJ heat shock N-terminal domain-conta... 31 3.8
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 31 3.8
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 31 3.8
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 31 3.8
At5g56220.1 68418.m07016 expressed protein 31 5.0
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 31 5.0
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 30 8.8
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 30 8.8
At3g02220.1 68416.m00203 expressed protein 30 8.8
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 41.5 bits (93), Expect = 0.003
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 337 SKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFKNRHRSQNFAENDNHDNSPANQSKK 396
SK+ R PT + S DDS SRR+++S S ++R + + + +++ D+S S K
Sbjct: 812 SKDKRRR-SPTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSK 870
Query: 397 FKNRNAQRTPSTR 409
KNR+ S R
Sbjct: 871 RKNRSPSPGKSRR 883
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 41.5 bits (93), Expect = 0.003
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 337 SKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFKNRHRSQNFAENDNHDNSPANQSKK 396
SK+ R PT + S DDS SRR+++S S ++R + + + +++ D+S S K
Sbjct: 782 SKDKRRR-SPTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSK 840
Query: 397 FKNRNAQRTPSTR 409
KNR+ S R
Sbjct: 841 RKNRSPSPGKSRR 853
Score = 33.1 bits (72), Expect = 0.95
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 317 RAKISPSPTHRILKTAAPAISKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFKNRHR 376
R +SPSP K ++P+ ++ + + S + S SRR+ +S S ++H
Sbjct: 807 RRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRRHVSSRSPHSKHS 866
Query: 377 SQNFAENDNHDNSPANQSKKFKNRNAQR 404
+HD S + +S+ ++R+ R
Sbjct: 867 QHKNTLYSSHDKSRSKRSRS-RSRSPHR 893
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 34.3 bits (75), Expect = 0.41
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 33/243 (13%)
Query: 179 PPSIISSKINSVVQVKSSQSDEEPAILISNNNLGEPEYDFLSRQPSEFVEETYKVINIRP 238
PP SSK S + + + EP+ EP+ +SR+ + + YK +P
Sbjct: 238 PPRTRSSKETSDILTTTQPAIVEPS---------EPKVRRVSRRKQLYAKR-YKARETQP 287
Query: 239 SKTHGSKPKHAHKNRAHQPSPPSDDD-EHPLGLVTTLGGTIVKDG---LTTIHETSVIGT 294
+ S+PK H N + SPP E ++TT I + + +++ +V T
Sbjct: 288 AIAESSEPKVLHVNDENVSSPPEAHSLEKASDILTTTQPAIAESSEPKVPHVNDENVSST 347
Query: 295 ---YISGKYAQVLNSNSKIIQPAGHRAKISPSPTHRILKTAAPAISKNHRHNLEPTPSIS 351
+ S K + + P R S T IL T P I+++ + ++
Sbjct: 348 PRAHSSKKNKSTRKNVDNVPSPPKTR---SSKKTSDILTTTQPTIAESSEPKVR---HVN 401
Query: 352 DDDSSFGKTSRRQTISGSSFKNRHRSQNFAENDNHDNSPANQSKKFKNRNAQRTPSTRFG 411
DD+ S T R + SS KN+ +N +DN + P +S K K N T
Sbjct: 402 DDNVS--STPR----AHSSKKNKSTRKN---DDNIPSPPKTRSSK-KTSNILATTQPAKA 451
Query: 412 RPA 414
P+
Sbjct: 452 EPS 454
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 33.9 bits (74), Expect = 0.54
Identities = 64/256 (25%), Positives = 99/256 (38%), Gaps = 38/256 (14%)
Query: 469 PSPVEQVTPAPSTSLYKFTLNRTPGSGRWQYKTSPKPKVTIRKAVSEEEL------QQTT 522
P P E TP S S+ LN T ++++ PKP + K++ E L Q ++
Sbjct: 175 PPPQEAKTPPSSPSMM---LNATE-----EFESQPKPPLLPSKSIDETRLRSPLMSQASS 226
Query: 523 PNTNPL--LDDTQLNDISPQA---RSDNDLEL-SGSQSGPGTLLDNDTEDNSIEKLP--- 573
P P +D+ + SP +SD + S P LL +N K P
Sbjct: 227 PPPLPSKSIDENETRSQSPPISPPKSDKQARSQTHSSPSPPPLLSPKASENHQSKSPMPP 286
Query: 574 PVETLKVEISTPADFSDVYYEIATIKSPYTFQVGRVKNTRVITVTSTIEKRLEPTVAPSQ 633
P T ++ +S+ + I SP T + ++ T+ K P + P+Q
Sbjct: 287 PSPTAQISLSSLK---------SPIPSPATITAPPPPFSSPLSQTTPSPKPSLPQIEPNQ 337
Query: 634 ISLNEPLTENILATASPYGKDHNLDSSIATLPAITLPSDMETPPLETITETFSTTQNMLK 693
I P N + ASP + NL A L +P+ E P E T+ M+
Sbjct: 338 IKSPSPKLTNTESHASP---EQNLVKPDANL-MNKIPAKNEVPKNRGTLE--KKTEPMIM 391
Query: 694 THILPVVRDVNMTSSL 709
I V+ N + SL
Sbjct: 392 MFINSNVQGFNTSLSL 407
>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
protein vacontains Pfam profile PF01535: PPR repeat
Length = 621
Score = 33.1 bits (72), Expect = 0.95
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 729 PMDYFQFIPSKTLKEFNSRLDEAGSELHLELDFGDSTEDEDGVPRRVFPPELDLANIGSD 788
P+D F +PS+ L +F + + S L L L+ S E E+G+ + P++ L + +
Sbjct: 38 PLDSFAIVPSRFLWKFRTFSSKPDSMLQLVLENDWSKEVEEGLRK----PDMSLTHETAI 93
Query: 789 FDLTEIDKY 797
+ L +++KY
Sbjct: 94 YVLRKLEKY 102
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 33.1 bits (72), Expect = 0.95
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 850 IPNVVTTS---KPIFKYETIYESHVI--PFFDGRNTVQSTISRPIATVTKTEYEIGTSSL 904
IPN T+S KP +E I S + PFF G +TVQS S+PI ++T+Y S++
Sbjct: 274 IPNSSTSSSQVKPNHNFEEIKWSEYLNTPFFIG-STVQSQTSQPIYIKSETDYLANVSNM 332
>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1087
Score = 32.7 bits (71), Expect = 1.3
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 498 QYKTSPKPKVTIRKAVSEE---ELQQTTPNTNPLLDDTQ-LNDISPQARSDND-LELSGS 552
+++ S P I KA +E+ + T P L+ Q N + R++N+ +E+S
Sbjct: 433 EHEQSYNPSTGIEKAENEDMEISIPAAKEETLPALEYEQSYNSYTGNERAENEVMEISTP 492
Query: 553 QSG-PGTLLDNDTEDNSIEKLPPVETLKVEISTPADFSDVYYEIATI---KSPYTFQVGR 608
+ P + L+ + NS E +EISTPA+ +V + TI P T+++
Sbjct: 493 RKDEPLSALEYEQSYNSSTSNEKAENEDMEISTPAEKENVDLSLKTIDVNAKPETYEL-T 551
Query: 609 VKNT 612
+KN+
Sbjct: 552 LKNS 555
>At3g17100.2 68416.m02182 expressed protein
Length = 230
Score = 32.3 bits (70), Expect = 1.7
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 450 TPANNNENQSRRGFKPRAQPSPVEQVTPAPSTSLYKF 486
T ++N ++SRR K ++ PS VE+ +P+PS SL K+
Sbjct: 15 TTTSSNSDRSRRKRKKKSSPSSVEK-SPSPSISLEKW 50
>At3g17100.1 68416.m02181 expressed protein
Length = 230
Score = 32.3 bits (70), Expect = 1.7
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 450 TPANNNENQSRRGFKPRAQPSPVEQVTPAPSTSLYKF 486
T ++N ++SRR K ++ PS VE+ +P+PS SL K+
Sbjct: 15 TTTSSNSDRSRRKRKKKSSPSSVEK-SPSPSISLEKW 50
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 31.9 bits (69), Expect = 2.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 504 KPKVTIRKAVSEEELQQTTPNTNPLLDDTQLNDISPQARSDNDLELSGSQSGPGTLLDND 563
K +V + + + E+ + + + D + +DISP S+ E ++G L +D
Sbjct: 54 KKEVVEEEPLEDYEVTDDSDEDDEVSDGSDEDDISPAVESEEIDESDDGENGSNQLFSDD 113
Query: 564 TEDNSIEKL 572
E+N E L
Sbjct: 114 EEENDEETL 122
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 31.9 bits (69), Expect = 2.2
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 313 PAGHRAKISPSPTHRILKTAAPAISKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFK 372
P+ A S T I + PA + R N PTP+ S SF + + + +
Sbjct: 161 PSSSSASSSVPVTQGIANASVPAPKQAGRANPNPTPNHS-RQRSFKQRNGASGSANGTVS 219
Query: 373 NRHRSQNFAENDNHDNSPANQSKK----FKNRNAQRTPSTR 409
+F E +H+ SP Q++K +N PS R
Sbjct: 220 QPSAQGSFTELPSHNPSPRGQNQKNGFASQNHGGTENPSQR 260
>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
similar to homeobox transcription factor Hox7
[Lycopersicon peruvianum] GI:19486; contains Pfam
PF00046: Homeobox domain
Length = 476
Score = 31.5 bits (68), Expect = 2.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 233 VINIRPSKTHGSKPKHAHKNRAHQPSPPSDDDEH 266
++ R S G + A K++ H P P S+DDEH
Sbjct: 226 LLGTRKSFNPGPSYELARKSKLHSPDPDSEDDEH 259
>At5g06110.1 68418.m00679 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 31.1 bits (67), Expect = 3.8
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 330 KTAAPAISKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFKNRHRSQNFAENDNHD-- 387
K PA +N R + P P + D+++ + R + + +FK+ + F E + HD
Sbjct: 199 KVFGPAFKRNARWSNSPLPDLGDENTPLKEVDRFYS-TWYTFKS---WREFPEEEEHDIE 254
Query: 388 NSPANQSKKFKNR-NAQRTPSTR 409
+ + + K++ R NA++T R
Sbjct: 255 QAESREEKRWMERENARKTQKAR 277
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 31.1 bits (67), Expect = 3.8
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 451 PANNNENQSRRGFKPRAQPSPVEQVTPAPSTSLYKFTLNRTPGSGRWQYKTSPKPKVTIR 510
P + ++++ G ++PSPV + TP P+T ++K TP K SP P ++
Sbjct: 404 PVDCSKDKCAGGSSTPSKPSPVHKPTPVPTTPVHK----PTPVPTTPVQKPSPVPTTPVQ 459
Query: 511 K 511
K
Sbjct: 460 K 460
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 532 TQLNDISPQARSDNDLELSGSQSGPGTLLDNDTEDNSIEKLPPVETLKVEISTPADFSDV 591
T +N + D E SG ++ T+ DN+T S+ + P +ETLK + T A+ V
Sbjct: 44 TSVNSLQGNEAVDQT-ETSGQKNS--TVSDNNTISLSLSEEPALETLKESVDTSAELGAV 100
Query: 592 YYEI 595
E+
Sbjct: 101 TDEV 104
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 853 VVTTSKPIFKYETIYESHVIPFFDGRNTVQSTISRPIATVTKTEYEIGTSSLP 905
++ ++P+ + + +DG + +Q+ I P V+ E + GTSSLP
Sbjct: 771 IIHPTRPVHPQAQTPPAPLSTSYDGADEIQAFIGHPSYPVSNNETQAGTSSLP 823
>At5g56220.1 68418.m07016 expressed protein
Length = 973
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 176 QGTPPSIISSKINSVVQVKSSQSDEEPAILISNNNLGEPEYDFLSRQPSE 225
+ T PSI + K + + K SQSD+ P+ S+ +Y+F QPS+
Sbjct: 76 RATTPSITTHKPSPPLSYKGSQSDDVPS---SSYTPPSDQYEFSDEQPSD 122
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 492 PGSGRWQYKTSPKPKVTIRKAVSEEELQQTTPNTNPLLDDTQL 534
PG GRWQ TS K + R+ VS + ++P++ P LD L
Sbjct: 298 PGLGRWQSGTSDSSK-SRRRVVSFNLAKASSPSSMPPLDQIAL 339
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 346 PTPSISDDDSSFGKTSRRQTISGSSFKNRHRSQNFAEN---DNHDNSPANQSKKFKN 399
P ++ +DD KT R S + HR E+ D H + PAN K++ N
Sbjct: 594 PQSAVQEDDGGESKTERSSE-SSKARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDN 649
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 453 NNNENQSRRGFKPRAQPSPVEQVTPAPSTSLYKFTLNRTPGSGRWQYKTSPKPKVTIRKA 512
++ N +RRG + R+QP+ V ++ P S+ ++K K SP P+ ++
Sbjct: 126 SDKSNGARRGRQWRSQPTNVSEIPPLLSSEVHKIHNYEKKDHKHRHNKRSPSPQAQSQRK 185
Query: 513 VSEEE 517
S +
Sbjct: 186 RSRTD 190
>At3g02220.1 68416.m00203 expressed protein
Length = 227
Score = 29.9 bits (64), Expect = 8.8
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 194 KSSQSDEEPAILISNNNLGEPEYDFLSRQPSEFVEETYKVINIRPSKTHGSKPKHAHKNR 253
K ++SDEE A ++ +G+ F S E+ ++ +V I HGS P HAH +
Sbjct: 143 KPNKSDEE-ASRSDSSKVGDV---FPSTSLEEYANKSGRVSGIIG---HGSVPDHAHDDA 195
Query: 254 AHQPSPPSD---DDEHPL 268
+ S D DDEH L
Sbjct: 196 SGPESDEDDNVGDDEHDL 213
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.127 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,761,680
Number of Sequences: 28952
Number of extensions: 944327
Number of successful extensions: 2515
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2504
Number of HSP's gapped (non-prelim): 28
length of query: 996
length of database: 12,070,560
effective HSP length: 88
effective length of query: 908
effective length of database: 9,522,784
effective search space: 8646687872
effective search space used: 8646687872
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -