GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001135-TA|BGIBMGA001135-PA|undefined
         (996 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   1.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   3.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   5.3  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    23   9.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   9.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 374 RHRSQNFAENDNHDNSPANQSKKFKNRN 401
           RH S++  +N+N  N  A+ S K  NR+
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSKSNNRH 460


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 493 GSGRWQYKTSPKPKVTIRKAVSEEELQQT 521
           G   W Y ++  PKV  +KA S+  LQ T
Sbjct: 315 GQSIWDYDSTYIPKVKNKKAGSKHLLQNT 343


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 371 FKNRHRSQNFAENDNHDNSPANQSKKFKNRNAQRTPSTR 409
           + N++     A+N N DN  AN ++   N+NA +    R
Sbjct: 422 YHNQNAGNQNADNQNADNQNAN-NQNADNQNANKQNGNR 459


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 160 EIKSVTNIVSSKVEVKQGTPPSIISSKINSVVQ 192
           ++ S  +  SSKV + +GT   I+S  I  V++
Sbjct: 10  DVSSAASKTSSKVMLTRGTVNDIVSRNITMVLE 42


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 326 HRILKTAAPAISKNHRHNLEPTPSISDDDSSFGKTSRRQTISGSSFKN-RHRSQNFAEND 384
           HR +       S+N     +     S+   S  ++ +R +   S +++ RH  +N   ND
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248

Query: 385 NHDNSPANQSKKFKNRN 401
              +   ++S+++K ++
Sbjct: 249 GERSCSRDRSREYKKKD 265


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 113  KSTIKEQSQVITKVEVVAGPSKIV 136
            K  I+ Q QV+++ +  +G SKI+
Sbjct: 1155 KQVIQTQYQVVSQAQTSSGQSKII 1178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,571
Number of Sequences: 429
Number of extensions: 11458
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 996
length of database: 140,377
effective HSP length: 64
effective length of query: 932
effective length of database: 112,921
effective search space: 105242372
effective search space used: 105242372
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)