Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    31   0.097
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.097
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.17 
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    28   0.91 
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    28   0.91 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.1  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   2.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   2.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   4.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   4.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   6.4  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   8.5  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  TGDLRRNNRNLLIHHQRIKNFG--YQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTR 104
           T DL+++N N ++H + I N     Q+        AS  ++  +   + PQ    S ++R
Sbjct: 110 TRDLKKSNENTVVHGKIIINLSTTAQSTLQVPSSAASGARTQRTSITNDPQSSQSSSVSR 169

Query: 105 FLALRHA--PTLPHRAAFKLSLDSPQTSSSTGDNH 137
             A   A  PT  +  A   +   P+T SS  D +
Sbjct: 170 NPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQY 204


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 85  SSHSKPASQPQ---QDHRSRLTRFLALRHAPTLPHRA--AFKLSLDSPQTSSSTGDNHAA 139
           +S S PA+ P     D     T    L   PTL  RA  ++  +  S  +SS T  + A+
Sbjct: 23  ASLSDPANTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNYNTSSASSSSLTSSSAAS 82

Query: 140 FKLSLDSPQASSSTGPCKLIS-ARTTLTKNDTTSS 173
             L+  S  ASSST      S   ++LT +  TSS
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSS 117



 Score = 25.0 bits (52), Expect = 6.4
 Identities = 27/98 (27%), Positives = 35/98 (35%)

Query: 76  SQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGD 135
           S   AS   +S S  AS       S      +L  +       A   +  S   SSS   
Sbjct: 77  SSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITS 136

Query: 136 NHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           +  A      S  ASSST    L S+ T  T + T +S
Sbjct: 137 SSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTS 174


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 127 PQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           P TSSS+    ++   S  S  ASSS+    +IS+ ++ + + T++S
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287



 Score = 25.8 bits (54), Expect = 3.7
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 85  SSHSKPASQPQQDHRSRLTRF-LALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLS 143
           SS    +S P     S LT   L+    P+    ++   S  S  +SSST  + ++   S
Sbjct: 213 SSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS-S 271

Query: 144 LDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           + S  +SSS+ P    S  +T++ + ++SS
Sbjct: 272 IISSSSSSSSSPT---STSSTISSSSSSSS 298



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 76  SQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQT---SSS 132
           S I +S   SS     S       S  + F +   + ++   ++F  S  S  +   SSS
Sbjct: 288 STISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSS 347

Query: 133 TGDNHAAFKLSLDSPQASSSTGPCKLISART---TLTKNDTTSS 173
           +  + ++F  +  S ++SSS       S+ T   TLT + ++SS
Sbjct: 348 SSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS 391



 Score = 24.6 bits (51), Expect = 8.5
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 86  SHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKL--SLDSPQTSSSTGDNHAAFKLS 143
           S S  +SQP     S  T   A   + +  + ++  +  S  SP +SSS+    ++   S
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTS 238

Query: 144 -LDSPQASSSTGPCKLISARTTLTKNDTTSS 173
            + S  +SSS+    L S+ ++ T + ++SS
Sbjct: 239 SIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 45  PTTGDLRRNNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTR 104
           P    LRR  RNL IHHQ I+          +Q     R   +   +S P    +S    
Sbjct: 183 PHLETLRR--RNLSIHHQHIQ------AHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234

Query: 105 FLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTT 164
              +  +  L   +   L+  SP + SS  DN A    ++DS   + S  P    S+   
Sbjct: 235 SNHIHASGNLALGSNSGLNPRSPNSFSSPLDNPALH--TVDSTNVNGSLSPLSNSSSINQ 292

Query: 165 LTKNDTTSS 173
           + +N+T  S
Sbjct: 293 VHQNETHGS 301


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 76  SQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFK-LSLDSPQTSSSTG 134
           S  K SH          Q  Q   S L       H P+L     F   SL+   + SST 
Sbjct: 6   SLYKFSHSFRKRIPVMFQRAQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSSRSSTN 65

Query: 135 DNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTT 171
           D+   F    D+  +S  T P K   +  +L + D T
Sbjct: 66  DDQQTFSSQSDNLPSSPITLPAKRGRSAASLKQLDNT 102


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 126 SPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           S  +SSS+  + ++ K S  S  +SSS+   K  S+ ++ +K+ ++SS
Sbjct: 156 SSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS 203


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 123 SLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPC--KLISARTTLTKNDTTSS 173
           SL S   SSST D  +      D+    S   P   K +S+ TTL K  +TSS
Sbjct: 511 SLASEVYSSSTVDTISKLNTDKDNYLIKSKKEPIQQKSVSSETTLVKPSSTSS 563


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 87  HSKPASQPQQDHRSRL--TRFLA-LRHAPTLPHRAAFKLSLDSPQ 128
           +SK  SQ   +H + L  T++   L H+P++P R  F  +L+S Q
Sbjct: 407 NSKSHSQTGSEHSTPLLDTKYRKRLPHSPSMPSRVEFLPALESSQ 451


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 70  QNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQT 129
           Q   + S + ++   SS S P+S       S  +   +   + +    ++   S  S  +
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183

Query: 130 SSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           SSS+  + ++   S  S  +SSS+ P   I++ T+ + + ++SS
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVP---ITSSTSSSHSSSSSS 224


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 109 RHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQAS--SSTGPCKLISARTTLT 166
           +  P    R   K+  DSP  +S    +  + ++SLDS  +   S  G  +    + TL 
Sbjct: 541 KRRPKSKRRITGKVVFDSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEK-EKQATLP 599

Query: 167 KNDTTSSLGG 176
           +  ++SS+ G
Sbjct: 600 RRRSSSSMKG 609


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 65   KNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSL 124
            ++F Y    + S   +S   S+    AS   Q      TR  A+    T  HR++    L
Sbjct: 3574 RSFSYSRFSSGSLDSSSVFNSTTVSTASGISQGSVLSSTR--AIESESTASHRSSVLSEL 3631

Query: 125  DSPQTS----SSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSL 174
             S   S    SS+    +    S+ S   SSS G     S+ + +T N   S++
Sbjct: 3632 SSYDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTV 3685


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 77  QIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDN 136
           Q+    R+   S+  S+ +  +  R T F     +PT  H A       SP+  ++TG N
Sbjct: 62  QLARLQREEEQSRILSRSRSSNNKRRTSFGKNGASPT--HSA-------SPRQGNNTGAN 112

Query: 137 HAAFKLSLDSPQASS 151
            A F  S +S  + S
Sbjct: 113 GALFSQSTNSSNSGS 127


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 70  QNPPAFSQIKASHRQSSHSKPASQPQQDH---RSRLTRFLALRHAPTLPHRAAFK-LSLD 125
           QN     +  A   Q+S S   S P  DH   ++  +  L+ R         +FK     
Sbjct: 45  QNQVELDEQFARSLQNSQSSSYSLPPFDHPPSKNPTSSSLSTRKRWRQKRLWSFKNFPFR 104

Query: 126 SPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLG 175
            P   +ST  N +    SL S  +SSST     I   T+   ND  S LG
Sbjct: 105 PPTRLTSTPSNSS----SLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLG 150


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 122 LSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTS 172
           L + +PQ  + T  NHA  +L   S   +S+T P +  +  T  + +  TS
Sbjct: 33  LQVANPQRKAKTPSNHATEELQQSS--TNSTTLPTQEAAVETNASASHETS 81


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 123 SLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           S DS   SSS   +  +   S DS   SSS+      S+    +  DTT+S
Sbjct: 276 SSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTS 326


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 112 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTT 171
           P+L  RA+   S  S   S+S     +    S  S   SSS+G   +I+A      N+  
Sbjct: 46  PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG-TSVITASDVSASNEII 104

Query: 172 SS 173
           SS
Sbjct: 105 SS 106


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 112 PTLPHRAAFKLSLDSPQTSSSTGD-NHAAFKLSLDSPQASSS--TGPCKLISARTTLTKN 168
           PT+P  +    S+  P TS+S+ D N +    +  S   S+S  TG    +S   T T  
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVP 252

Query: 169 DTTSS 173
            T++S
Sbjct: 253 PTSTS 257


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 113 TLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGP----CKLISARTTLTKN 168
           T+P  ++      S   SSST  + ++  +   SP ASSS+ P      L+S  +    N
Sbjct: 656 TIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSN 715

Query: 169 DTTSSL 174
            T SSL
Sbjct: 716 ITHSSL 721


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,866
Number of Sequences: 5004
Number of extensions: 35429
Number of successful extensions: 185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 57
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)