Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 80  ASHRQSSHSKPASQPQQDHRSRLTR 104
           +S R  S S   SQP QDH    ++
Sbjct: 39  SSSRSPSPSLLTSQPHQDHNKEKSK 63


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 64  IKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLT 103
           +  +GY  P +  Q +  HR         QP ++   R+T
Sbjct: 322 VSPYGYVKPISPEQEELIHRLVYFQNEYEQPSEEDLKRIT 361


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 37  KIFPLSYIPTTGDLRRNNRNLL 58
           KI P   +P  G+L  NN+  L
Sbjct: 863 KIVPEELVPLEGNLMINNKYAL 884


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 8   HFQDKAHIYKFRTTTFGPSVYRAI 31
           HF+  A   KF +  FG ++ R I
Sbjct: 445 HFKQIARAVKFTSKLFGRALSRRI 468


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,039
Number of Sequences: 429
Number of extensions: 2310
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)