Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
(177 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03410.2 68417.m00465 peroxisomal membrane protein-related co... 30 0.76
At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ... 30 1.0
At1g09050.1 68414.m01009 expressed protein 29 1.3
At4g03410.1 68417.m00464 peroxisomal membrane protein-related co... 29 1.8
At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote... 29 1.8
At3g10650.1 68416.m01281 expressed protein 29 1.8
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 29 1.8
At4g28610.1 68417.m04091 myb family transcription factor, putati... 29 2.3
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 29 2.3
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 29 2.3
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa... 28 3.1
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 3.1
At5g07140.1 68418.m00814 protein kinase family protein contains ... 28 4.1
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 27 5.4
At1g56020.1 68414.m06431 expressed protein 27 5.4
At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At3g11600.1 68416.m01418 expressed protein weak similarity to B-... 27 9.4
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 27 9.4
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 27 9.4
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 27 9.4
>At4g03410.2 68417.m00465 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 361
Score = 30.3 bits (65), Expect = 0.76
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 6 LRHFQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIPTTGDLRRNNRNLLIHHQRI- 64
L FQ A I+ TTF P + A WK++PL+++ T G + + R L + +
Sbjct: 233 LLRFQSPADIFSEIKTTFLPML-----TAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELI 287
Query: 65 ---KNFGYQNPPAFSQIKASHRQSSHSKPASQ 93
Y N A +Q SSHS Q
Sbjct: 288 WVTILSTYSNEKAEAQASEETNSSSHSSEVCQ 319
>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
(SCL14) identical to GB:AAD24412 from [Arabidopsis
thaliana] (Plant J. 18 (1), 111-119 (1999))
Length = 769
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 127 PQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLGG 176
P +SS++ +H +L+ DSP S S G ++ TT T +D+ S+ G
Sbjct: 128 PSSSSASSVDHPE-RLASDSPDGSCSGGAFSDYASTTTTTSSDSHWSVDG 176
>At1g09050.1 68414.m01009 expressed protein
Length = 916
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 79 KASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFK-LSLDSPQTSSSTGDNH 137
K + SK +P+ R+ T + A+ AP L R +S +SP + GDN
Sbjct: 565 KTLEKAKDPSKRVIKPRSTPRAE-TNYYAVDSAPYLKRRRLSACISRESPVSKHLPGDND 623
Query: 138 AAFKLSLDSPQAS 150
+ L+S Q S
Sbjct: 624 TKMTICLESEQQS 636
>At4g03410.1 68417.m00464 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 317
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 6 LRHFQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIPTTGDLRRNNRNLLIHHQRI- 64
L FQ A I+ TTF P + A WK++PL+++ T G + + R L + +
Sbjct: 233 LLRFQSPADIFSEIKTTFLPML-----TAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELI 287
Query: 65 ---KNFGYQNPPAFSQIKASHRQSSHS 88
Y N A +Q SSHS
Sbjct: 288 WVTILSTYSNEKAEAQASEETNSSSHS 314
>At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein
similar to Alternaria stem canker resistance protein
(ASC1) [Lycopersicon esculentum] GI:7688742; contains
Pfam profile PF03798: Longevity-assurance protein (LAG1)
Length = 296
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 9 FQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIP 45
F + A I+K+ FG SV A+ W + L Y P
Sbjct: 186 FMETAKIFKYSEKEFGASVCFALFAVSWLLLRLIYFP 222
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 121 KLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLGG 176
+LS + SSS+ + F S +P +S ++GP + S+ T + TT S GG
Sbjct: 1070 QLSSTNSSASSSSTMSSPLFGTSWQAPNSSPNSGP--VFSSSFTTSSTPTTFSFGG 1123
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 29.1 bits (62), Expect = 1.8
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 62 QRIKNFGYQNPPAFSQIKASHRQSSHSKPAS----QPQQDHRSRLTRFLALRHAPTLPHR 117
+ I + G +NPP+ K + SS S +S +P + H + +R H P+L R
Sbjct: 756 EAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSR--GYNHTPSL--R 811
Query: 118 AAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLG 175
A+ P SSS + + K S +ASSS G S R + N T S G
Sbjct: 812 AS-----KEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSPRVSKELNKTPSISG 864
>At4g28610.1 68417.m04091 myb family transcription factor, putative
/ phosphate starvation response regulator, putative
(PHR1) contains Pfam profile: PF00249 myb-like
DNA-binding domain; identical to cDNA phosphate
starvation response regulator 1 (phr1 gene) GI:15384675
Length = 409
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 12 KAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIPTTGDLR 51
K+H+ K+RT + P SP R K+ PL +I T+ DL+
Sbjct: 271 KSHLQKYRTARYRPEPSETGSPER-KLTPLEHI-TSLDLK 308
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 111 APTLPHRAAFKL-SLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKND 169
AP++ +A S +PQ ++S+ DN A+F + +P + S P + + L++
Sbjct: 295 APSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAPSLNVSQPPPSGNTLDSLLSQLA 354
Query: 170 TTSSLGGE 177
TSS+ G+
Sbjct: 355 VTSSVPGQ 362
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 111 APTLPHRAAFKL-SLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKND 169
AP++ +A S +PQ ++S+ DN A+F + +P + S P + + L++
Sbjct: 295 APSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAPSLNVSQPPPSGNTLDSLLSQLA 354
Query: 170 TTSSLGGE 177
TSS+ G+
Sbjct: 355 VTSSVPGQ 362
>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 717
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 99 RSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKL 158
RS + + + PT P S +P+TS+S+ + S S +SSS G +
Sbjct: 64 RSSASTSVTIPSLPTSPKLHCRTTSNATPRTSNSSSPKFFSNPSSPKSSSSSSSQGGGGV 123
Query: 159 ISARTTLTKNDTTSS 173
R TL N + SS
Sbjct: 124 SLLRATLLLNKSNSS 138
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 129 TSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLGG 176
T+ +N+++ LS D + GP K I + N+T SS G
Sbjct: 139 TTDMNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At5g07140.1 68418.m00814 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 583
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 115 PHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGP 155
P ++F +S+D QT S GD+ + L+ D + S GP
Sbjct: 295 PPSSSFSVSVDEWQTIQSGGDDIRKWLLNSDDLEFSGQLGP 335
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 52 RNNRNLLIHHQRIKNFGYQNPPAFSQI-KASHRQSSHSKPASQPQQD 97
R+N N LIH ++ N + ++I +A+ R+SS P+ +P D
Sbjct: 278 RSNPNQLIHQEQTGNSSFPYAHEVAEIQEATRRKSSAVAPSDKPLGD 324
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 27.5 bits (58), Expect = 5.4
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 71 NPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTS 130
NP S + HR S S AS P Q S ++ +++ A+ +LSL S +S
Sbjct: 166 NPKTSSFKQFLHRGSKSSTAASSPLQKE-SDISESISV---------ASSRLSLSSSSSS 215
Query: 131 SSTGDNHAAFKLSLDSPQAS 150
S D+ L LD P A+
Sbjct: 216 SHEIDDLPRLSLDLDKPSAN 235
>At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 353
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 88 SKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLS-LDSPQTSSSTGDNHAAFKLSLDS 146
SK S ++ LTRF+ + A + S L+ +TSSS N +F+ SLDS
Sbjct: 157 SKDESNSVNNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDS 216
Query: 147 PQASSSTG 154
+ G
Sbjct: 217 SLKVNDAG 224
>At3g11600.1 68416.m01418 expressed protein weak similarity to
B-type cyclin (GI:849074) [Nicotiana tabacum]
Length = 117
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 146 SPQASSSTGPCKLISARTTLTKNDTTSSL 174
SP S++T P +S+ T +N+T +S+
Sbjct: 32 SPNRSNTTSPSSCVSSETNQEENETITSM 60
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 77 QIKASHRQSSHSKPASQPQQDHR 99
Q A+HR+S+ S AS P DH+
Sbjct: 173 QAAANHRRSASSGGASPPSDDHK 195
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 11 DKAHIYKFRTTTFGPSVYRAISPARWKIFPLSYIPTTGDLRRNNRN---LLIHHQRIKNF 67
D A+I+ ++ F + I ++ F I T +L R+ RN L+ +HQR +NF
Sbjct: 92 DPANIHHIMSSNFSNYIKGPIFHEIFEAFGDGIINTDAELWRDWRNASQLIFNHQRYQNF 151
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 98 HRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCK 157
HR++ T L H A+ SL S G H+ +K SL + + T K
Sbjct: 43 HRTKYTSSFRLNQQEEQTHSASSSFSLQLHSRVSVRGTEHSDYK-SLTLARLNRDTARVK 101
Query: 158 LISARTTLTKNDTTSS 173
+ R L N+ + +
Sbjct: 102 SLITRLDLAINNISKA 117
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.128 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,370,033
Number of Sequences: 28952
Number of extensions: 177551
Number of successful extensions: 511
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 22
length of query: 177
length of database: 12,070,560
effective HSP length: 77
effective length of query: 100
effective length of database: 9,841,256
effective search space: 984125600
effective search space used: 984125600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -