GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
         (177 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    29   0.016
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.3  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 0.016
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 119 AFKLSLD-SPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSS 173
           +F LSL  SP  SS    +H   +   DSP  +S    CKL S+      N +++S
Sbjct: 38  SFPLSLGMSPYASSQHHHHHLQARPPQDSPYDASVAAACKLYSSEGQQNSNYSSNS 93


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 84  QSSHSKPASQPQQDHRSRLTRFLALRHAPTLP 115
           Q S+  P +QP + + + +    A  H P  P
Sbjct: 77  QHSYQSPQTQPARFYSTPIVPHFAYNHNPLTP 108


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 112 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGP 155
           P L  R     ++ S       G     +K+  DSP  +SS  P
Sbjct: 81  PALKSRKLNNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSP 124


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,871
Number of Sequences: 317
Number of extensions: 1849
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 114,650
effective HSP length: 53
effective length of query: 124
effective length of database: 97,849
effective search space: 12133276
effective search space used: 12133276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)