Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
(177 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1105 - 27634787-27636025 31 0.69
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 31 0.69
04_04_0538 + 26085181-26085654 30 0.92
05_06_0245 - 26651770-26652900 28 3.7
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 28 4.9
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 28 4.9
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 28 4.9
02_05_0325 - 27951570-27952808 28 4.9
01_07_0261 + 42369666-42369808,42369946-42370108,42370453-423705... 28 4.9
05_05_0152 + 22762994-22763326,22763857-22763989,22764281-227643... 27 6.5
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 27 6.5
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228... 27 6.5
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 27 6.5
04_01_0575 - 7454421-7455707 27 8.6
03_06_0562 + 34732027-34733121 27 8.6
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 27 8.6
>06_03_1105 - 27634787-27636025
Length = 412
Score = 30.7 bits (66), Expect = 0.69
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 71 NPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTS 130
NPP +++SHR S+ S +S+ + R R +P P R LS+DSP+ +
Sbjct: 264 NPPRIRLVRSSHRHSTSSSSSSRAGRSPARR-------RPSPPPPPRC---LSVDSPRMN 313
Query: 131 SSTGDNHAAFKLSLDSPQASSSTGPCKLISA 161
SS K+ + SSS+ PC L +A
Sbjct: 314 SSG-------KIVFQGLERSSSS-PCTLHAA 336
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 30.7 bits (66), Expect = 0.69
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 89 KPASQPQQDHRSRLTRFLALRHAPTLPHRA---AFKLSLDSPQTSSSTGDNHAAFKLSLD 145
KPA P++ H SR + + H PT R+ + S T ST + +LSLD
Sbjct: 364 KPAPAPRELHTSRAPGYASQGHIPTTRARSPKLGRSKNTSSVSTEESTVPSSRPARLSLD 423
Query: 146 SPQASSSTGPCKLISART 163
+ +S G K+ +A T
Sbjct: 424 --ERASQNGVKKVPAANT 439
>04_04_0538 + 26085181-26085654
Length = 157
Score = 30.3 bits (65), Expect = 0.92
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 70 QNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQT 129
Q PP A HR + + S P ++ +ALR A ++L + P +
Sbjct: 10 QAPPLADLAVAIHRAAEATAALSAPSSSSQAAAAAVVALRDAHAAIGGFLYRLDVSVPAS 69
Query: 130 SSSTGDNHAA 139
SSS+ D A
Sbjct: 70 SSSSDDQPMA 79
>05_06_0245 - 26651770-26652900
Length = 376
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 59 IHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTR 104
+HHQR + +P +++ H S S+PA+ P Q+ R +R
Sbjct: 140 LHHQRTEEVVSSSPVDEVKLQG-HYARSRSEPAAAPAQEERKAASR 184
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 27.9 bits (59), Expect = 4.9
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 68 GYQNPPAFSQIK-ASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDS 126
GY+ P + + + AS RQS+H+ A P+Q R +A R A A + S
Sbjct: 90 GYRLPESPPRPRVASRRQSTHAPTAPSPRQPGRLPAHLTVASRAAQPASRLRAPARASPS 149
Query: 127 PQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLIS--ARTTLTKNDTTSSLGG 176
P + + G + PQA++ + +L + RT+ TS L G
Sbjct: 150 PD-AQTPGRRSRPRRCLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRLAG 200
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 27.9 bits (59), Expect = 4.9
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 86 SHSKPASQPQQDHRSRLTRFLA--LRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLS 143
SHS PA++ + ++L +A L + S SP SS+GD + L
Sbjct: 5 SHSHPAARRRSGLGAQLCAVVAALLLLVSLAVLHSRLSSSSSSPFPLSSSGDGVSNSSLV 64
Query: 144 LDSPQASSSTGPCKLISARTTLTKNDTTSS 173
D ++ P I+A TT T T ++
Sbjct: 65 EDEDDGAAVLDPTVTITATTTTTTTTTNAA 94
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 124 LDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTTSSLGGE 177
+D P SST + + F ++ + +S+ P ++ R + N +T + G+
Sbjct: 453 MDHPSFHSSTSSSTSQFPIATNQVTGNSAKSPHPIVQQRLVQSFNQSTPKMPGQ 506
>02_05_0325 - 27951570-27952808
Length = 412
Score = 27.9 bits (59), Expect = 4.9
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 62 QRIKNFGYQ--NPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAA 119
+R++ FG NP A A+ +SS+ A Q R L L P H A
Sbjct: 327 KRVRLFGVNLDNPHAGGGGGAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGA 386
Query: 120 FKLSLDSPQTSSST-GDNHAAFKLSL 144
+ SP +SSS+ D H+A L L
Sbjct: 387 ESSAASSPSSSSSSKRDAHSALDLDL 412
>01_07_0261 +
42369666-42369808,42369946-42370108,42370453-42370585,
42370923-42371093,42371211-42371289,42371620-42371686,
42372231-42372330,42372643-42372719,42373201-42373293,
42373391-42373564
Length = 399
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 72 PPAFSQIKAS-HRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLP 115
PP+ + K + ++S+SKPAS Q R + L L A TLP
Sbjct: 22 PPSSAAAKPEPNEKASNSKPASPVQAPSPERTVKKLRLAKALTLP 66
>05_05_0152 +
22762994-22763326,22763857-22763989,22764281-22764362,
22764786-22764939,22765028-22765162
Length = 278
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 122 LSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISARTTLTKNDTT 171
LS PQ S S + A +L ++P +SSTGP + T + D T
Sbjct: 70 LSAAPPQPSPSPSPSVAFVRLPSEAPADASSTGPPPPLRRLTVVLDLDET 119
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 76 SQIKASHRQSSHS-KPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSST 133
S++K+ SS K +S P + R L +R TLP R L+ P SST
Sbjct: 801 SRLKSQPASSSQQDKDSSTPSSSAQVNSNRKLVIRRNNTLPTRNVKHLAFRDPAKLSST 859
>01_06_1820 +
40120861-40120863,40122484-40122612,40122710-40122895,
40123679-40123867,40124229-40124563,40124977-40125400
Length = 421
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 92 SQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTSSSTG 134
SQP DHRS++ L LR HR +K +STG
Sbjct: 256 SQPALDHRSQIHHRLTLRARKGQVHRRFYKTRGGGRCDDNSTG 298
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 114 LPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSST 153
+PH+ F L+L SSS GD AA L L SP +++T
Sbjct: 69 MPHKNIFSLNLILSAYSSS-GDLPAAQHLFLSSPHRNATT 107
>04_01_0575 - 7454421-7455707
Length = 428
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 83 RQSSHSKPASQPQQDHRSRLTR-----FLALRHAPTLPHRAAFKLSLDSPQTSSSTGD 135
R+S K A + ++D R R T +L + H T P + FK++ P + GD
Sbjct: 3 RRSKKQKLAKEDEEDARIRDTESPSSVYLVVGHGVTRPSYSLFKVNPHLPANADDGGD 60
>03_06_0562 + 34732027-34733121
Length = 364
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 111 APTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGPCKLISA 161
AP+ P AA S +P SST + D P+A +S+ P + + A
Sbjct: 167 APSPPSSAASSPSRAAPPPVSSTSGRKRKAEEESDHPEAPASSAPRRTLPA 217
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 71 NPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAPTLPHRAAFKLSLDSPQTS 130
+PP ++ +HS P + P +SR H P+ P + + +S
Sbjct: 147 SPPRADPFASAPASPAHSLPPNPPSSRRKSRF-------HYPSAPDAFSSSSAYRRAASS 199
Query: 131 SSTGDNHAAFKLSLDSPQASSSTGP 155
+ST AA ASSS+ P
Sbjct: 200 ASTSPTSAAKPHHRRHASASSSSSP 224
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.128 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,467,677
Number of Sequences: 37544
Number of extensions: 221810
Number of successful extensions: 619
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 18
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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