GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001134-TA|BGIBMGA001134-PA|undefined
         (177 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    32   0.012
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    26   0.57 
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    25   1.00 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   1.3  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   1.7  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   1.7  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    25   1.7  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   4.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.0  
AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synth...    22   9.3  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 31.9 bits (69), Expect = 0.012
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 48  GDLRRNNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLA 107
           G L  ++   L + Q +   G+  PPA   +  S   S  +  +S P   H        +
Sbjct: 662 GGLNLSHTAALANAQNLSLAGHIPPPAHGSLNLSAGGSPVAVVSSSPTGGHHLASP---S 718

Query: 108 LRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSP-QASSSTG 154
             H  T PH A   L+L S +++S+    H A + S  SP  A+SS+G
Sbjct: 719 PHHHLTSPHGA--PLALTSSKSASTHPSPHPATRASPSSPIVATSSSG 764


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 77  QIKASHRQSSHSKPASQPQQDHRS 100
           Q  +SH+Q S   P+SQ QQ  RS
Sbjct: 258 QHPSSHQQQSQQHPSSQHQQPSRS 281



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 53  NNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRHAP 112
           NN N  +HH  +++          +++   +Q +H +    P   H+ +  +  + +H  
Sbjct: 219 NNNNNSLHHGPLRDKELTEHEQLERLQQQQQQQTHHQQQQHP-SSHQQQSQQHPSSQHQQ 277

Query: 113 TLPHRAA 119
             P R+A
Sbjct: 278 --PSRSA 282


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 112 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSLDSPQASSSTGP 155
           PT  HR A + S      ++S+   H     +L++P ++  +GP
Sbjct: 323 PTTTHRLAARTSTPPDPETTSSQQCHPPVNDTLEAPNSTLVSGP 366


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 92   SQPQQDHRSRLTRFLALRHAPTLPHRAAFKL 122
            ++  QD   +L R L +R  P LP +AAF L
Sbjct: 1932 TRDHQDQMFKLLRHL-IRFVPRLPQQAAFAL 1961


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 60  HHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDH 98
           HHQ+      Q+P +  Q    H  S H +P  Q    H
Sbjct: 253 HHQQ-----QQHPSSHQQQSQQHPSSQHQQPTHQTHHHH 286



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 53  NNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRH 110
           NN N  +HH  +++          +++   +Q +H +    P   H+ +  +  + +H
Sbjct: 219 NNNNNSLHHGPLRDKELTEHEQLERLQQQQQQQTHHQQQQHP-SSHQQQSQQHPSSQH 275


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 60  HHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDH 98
           HHQ+      Q+P +  Q    H  S H +P  Q    H
Sbjct: 253 HHQQ-----QQHPSSHQQQSQQHPSSQHQQPTHQTHHHH 286



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 53  NNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRH 110
           NN N  +HH  +++          +++   +Q +H +    P   H+ +  +  + +H
Sbjct: 219 NNNNNSLHHGPLRDKELTEHEQLERLQQQQQQQTHHQQQQHP-SSHQQQSQQHPSSQH 275


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 60  HHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDH 98
           HHQ+      Q+P +  Q    H  S H +P  Q    H
Sbjct: 205 HHQQ-----QQHPSSHQQQSQQHPSSQHQQPTHQTHHHH 238



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 53  NNRNLLIHHQRIKNFGYQNPPAFSQIKASHRQSSHSKPASQPQQDHRSRLTRFLALRH 110
           NN N  +HH  +++          +++   +Q +H +    P   H+ +  +  + +H
Sbjct: 171 NNNNNSLHHGPLRDKELTEHEQLERLQQQQQQQTHHQQQQHP-SSHQQQSQQHPSSQH 227


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 108 LRHAPTL--PHRAAFKLSLDSPQTSSSTGDNHAAFK-----LSLDSPQASSS 152
           L  APT+   HRA  KL    P  SSS+G  +++ K     L   +PQ S+S
Sbjct: 51  LAPAPTVLGGHRANAKLPGAGPIVSSSSGSGNSSKKYAYCGLPYATPQQSAS 102



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 78  IKASHRQSSHSKPASQPQQDHRSR 101
           I A  +Q  H     QPQQ H+ +
Sbjct: 302 ILAQQQQQQHHHHQHQPQQQHQQQ 325


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 42   SYIPTTGDLRRNNRNLLIHH 61
            +Y+P   DL  ++  +L+HH
Sbjct: 1949 NYLPNDSDLPASSNFILLHH 1968


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 42   SYIPTTGDLRRNNRNLLIHH 61
            +Y+P   DL  ++  +L+HH
Sbjct: 1950 NYLPNDSDLPASSNFILLHH 1969


>AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synthase
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 10  QDKAHIYKFRTTTFGPSVYRAI 31
           Q+KAHIY     T    VY+ +
Sbjct: 87  QEKAHIYVCGDVTMAEHVYQTL 108


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,348
Number of Sequences: 2123
Number of extensions: 7444
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 516,269
effective HSP length: 60
effective length of query: 117
effective length of database: 388,889
effective search space: 45500013
effective search space used: 45500013
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)