Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    24   2.9  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    22   8.7  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    22   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    22   8.7  

>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 37  LREYNDTTYRAVGVRDCYITRYAGFVKAL 65
           L++   TTY+  G+R  ++    G++K +
Sbjct: 278 LKQVVQTTYKEAGMRGFFVGLTIGYIKVI 306


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 6    WRKVQGYKYIHNADLSPICGIFEDIRTSCQHLR 38
            W ++   K+I +   + IC IF D   S Q L+
Sbjct: 1208 WFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQ 1240


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
          L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 6  WRKVQGYKYIHNADLSPICGIFEDIRTSCQ 35
          WR  Q  KY H   L  +  + + +RT+ Q
Sbjct: 21 WRLSQRRKYRHRQRLRAVDEVVDVLRTALQ 50


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 28   EDIRTSCQHLREYNDTTYRAVGVRDC 53
            E + TS QH + + +T      ++DC
Sbjct: 1367 ESVHTSFQHFKLFTNTKQSLNQLKDC 1392


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,125
Number of Sequences: 5004
Number of extensions: 9679
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)