Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.70 
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   27   2.8  
SB_41710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_43709| Best HMM Match : NodZ (HMM E-Value=0.42)                     25   6.5  
SB_31482| Best HMM Match : CP2 (HMM E-Value=0)                         25   8.6  

>SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 13  KYIHNADLSPICGIFEDIRTSCQHLREYNDTTYR--AVGVRDC 53
           K I +  +  +  +FEDIR  C++LR  N T+YR  +V  + C
Sbjct: 261 KDIAHMSMLELTKLFEDIR-ECRYLRVGNHTSYRGDSVNTKQC 302


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 7  RKVQGYKYIHNADLSPICGIFEDI 30
          R+V+GY+Y H+A +S +CG   D+
Sbjct: 2  RRVRGYRYAHSAWMS-LCGQCVDV 24


>SB_41710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 17 NADLSPICGIFEDIRTSCQHLREYN 41
          N ++ PICG F    +S +H+ EY+
Sbjct: 26 NTEICPICGEFYPKSSSKEHIDEYH 50


>SB_43709| Best HMM Match : NodZ (HMM E-Value=0.42)
          Length = 499

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 22  PICGIFEDIRTSCQHLREYNDTTYR 46
           PI GI   IRTS  H   +ND +YR
Sbjct: 206 PILGIH--IRTSDHHFGSFNDFSYR 228


>SB_31482| Best HMM Match : CP2 (HMM E-Value=0)
          Length = 333

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8   KVQGYKYIHNADLSPICGIFEDIRTSCQHLRE-YNDTTYRAVG 49
           +++ + Y H+   +P    F+  R SCQ++ E   D  Y A G
Sbjct: 109 ELEHWNYWHSQQPNPQQRAFDIDRKSCQNIDENITDQAYNAAG 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,392
Number of Sequences: 59808
Number of extensions: 74047
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 16,821,457
effective HSP length: 44
effective length of query: 21
effective length of database: 14,189,905
effective search space: 297988005
effective search space used: 297988005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)