GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62056 Cluster: L-lactate dehydrogenase; n=2; Bacteria|...    31   3.3  
UniRef50_A3BLJ5 Cluster: Putative uncharacterized protein; n=2; ...    31   5.9  

>UniRef50_P62056 Cluster: L-lactate dehydrogenase; n=2;
           Bacteria|Rep: L-lactate dehydrogenase - Treponema
           denticola
          Length = 315

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 26  IFEDIRTSCQHLREYNDTTYRAVGVRDCYITRYAGFV 62
           I E++R S  H+ +Y  +TY AVG+    +TR AG +
Sbjct: 215 ILEEVRNSAYHIIDYKGSTYFAVGLA---LTRIAGAI 248


>UniRef50_A3BLJ5 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 957

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 3   AKSWRKVQGYKYIHNADLSPICGIFEDIRTSCQHLREY 40
           A +W+K  G K +   D+S +  +F D++ S Q+L EY
Sbjct: 256 ALAWQKHMG-KIVEMEDISRVYQLFLDVKRSAQYLMEY 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,605,767
Number of Sequences: 1657284
Number of extensions: 2214767
Number of successful extensions: 4825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4825
Number of HSP's gapped (non-prelim): 2
length of query: 65
length of database: 575,637,011
effective HSP length: 45
effective length of query: 20
effective length of database: 501,059,231
effective search space: 10021184620
effective search space used: 10021184620
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 65 (30.3 bits)