Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
(65 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 31 0.15
12_02_0831 + 23529021-23529162,23529383-23529435,23529727-235310... 26 3.3
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 26 3.3
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 26 3.3
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 26 3.3
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 26 4.4
06_01_0608 - 4399252-4399894,4401640-4402427 25 5.8
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 25 7.6
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 30.7 bits (66), Expect = 0.15
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 AKSWRKVQGYKYIHNADLSPICGIFEDIRTSCQHLREY 40
A +W+K G K + D+S + +F D++ S Q+L EY
Sbjct: 303 ALAWQKHMG-KIVEMEDISRVYQLFLDVKRSAQYLMEY 339
>12_02_0831 +
23529021-23529162,23529383-23529435,23529727-23531074,
23531154-23531324,23531672-23532531
Length = 857
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 14 YIHNADLSPICGIFEDIRTSCQHLREYNDTTYRAV 48
Y N LSP+ IFE+ SCQ ND + V
Sbjct: 709 YASNQPLSPV--IFEEAEFSCQETYTANDDPHSVV 741
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 26.2 bits (55), Expect = 3.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 9 VQGYKYIHNADLSPICGIFE 28
++GY+++ N DL +C +F+
Sbjct: 1122 LEGYEFLRNRDLKDLCRLFQ 1141
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 16 HNADLSPICGIFEDIRTSCQHL-REYNDTTY 45
H+ +P + +DI T C+ REY+DTTY
Sbjct: 313 HSKSFNP--RLIDDISTVCKWFTREYSDTTY 341
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 8 KVQGYKYIHNADLSPICGIFEDIRTSCQHLREYND 42
K G + I ADL + G++ D ++S + L+E +
Sbjct: 417 KANGREKISKADLEEVSGLYLDAKSSARLLQEQQE 451
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 1 MTAKSWRKVQGYKYIHNADLSPICGIFEDIRTSCQHLRE 39
++ K WR+ G +Y +S I E+ RTS + R+
Sbjct: 537 LSPKFWRRHDGSRYSSKYSISDIANYSEESRTSYKWERQ 575
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 13 KYIHNADLSPICGIFEDIRTSCQHLREY 40
K + D+S + +F D++ S Q+L EY
Sbjct: 429 KVVEMEDISRVYQLFLDVKRSTQYLMEY 456
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 5 SWRKVQGYKYIHNADLSPICGIFEDIRTSCQH 36
++ K+ + IH+ADL I ++ ++R H
Sbjct: 778 TYAKLNVFPKIHDADLDKISHVYAELRRESSH 809
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.138 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,620
Number of Sequences: 37544
Number of extensions: 55901
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 8
length of query: 65
length of database: 14,793,348
effective HSP length: 45
effective length of query: 20
effective length of database: 13,103,868
effective search space: 262077360
effective search space used: 262077360
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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