GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z78413-12|CAB01666.2|  397|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z78411-5|CAB01647.2|  397|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 19  DLSPICGIFEDIRTSCQHLREYNDTTYRAVGVRDCYITRY 58
           D+ P+C    +   +  H ++YN    R +G+R  Y+ RY
Sbjct: 378 DVKPVCDEANNTHQNLCHFQQYN-CNMRKLGIRSPYL-RY 415


>Z78413-12|CAB01666.2|  397|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 6   WRKVQGYKYIHNADLSPI 23
           W K +G KY +  +LSPI
Sbjct: 311 WAKSRGIKYSYTIELSPI 328


>Z78411-5|CAB01647.2|  397|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 6   WRKVQGYKYIHNADLSPI 23
           W K +G KY +  +LSPI
Sbjct: 311 WAKSRGIKYSYTIELSPI 328


>AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical
           protein Y73E7A.9 protein.
          Length = 558

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 11  GYKYIHNADLSPICGIFE 28
           G+ YI N D S I GIFE
Sbjct: 460 GHMYIWNRDTSKIQGIFE 477


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,842
Number of Sequences: 27539
Number of extensions: 52228
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 12,573,161
effective HSP length: 45
effective length of query: 20
effective length of database: 11,333,906
effective search space: 226678120
effective search space used: 226678120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)