GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   2.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    19   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       18   8.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 22 PICGIFEDIRTSCQHLREYNDTTYR 46
          PIC I + + +S   LR +    +R
Sbjct: 33 PICNICKRVYSSLNSLRNHKSIYHR 57


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 41 NDTTYRAVGVRDCYITRYAGFVK 63
          N+T    +GV +C  T    F++
Sbjct: 17 NETAKAIIGVDECQATPVIHFLQ 39


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 11  GYKYIHNADLSPICGIFEDIRTSCQHLREYN 41
           GY      D+ PI G  +D+       ++ N
Sbjct: 81  GYDISDFKDVDPIFGTIKDLEDLTAEAKKQN 111


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 28  EDIRTSCQHLREYNDTTY 45
           ED+R S     EY +  Y
Sbjct: 603 EDVRESEAFAEEYTEEAY 620


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,404
Number of Sequences: 429
Number of extensions: 537
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)