GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001133-TA|BGIBMGA001133-PA|undefined
         (65 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    30   0.17 
At5g19740.1 68418.m02347 peptidase M28 family protein ileal pept...    28   0.67 
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    26   3.6  
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-...    25   6.2  

>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1607

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 10  QGYKYIHNADLSPICGIFEDIRTSCQHLREYNDTTYRAVGVRDCYITRYAGFVKAL 65
           QG +YI+N D  P  G+   +   C+   +Y+  ++ ++  R   I+ +  + + L
Sbjct: 418 QGIQYIYNVDFPPPNGLLPTVYIYCEDTLQYSFASHLSMDFRRKGISAFVNYSETL 473


>At5g19740.1 68418.m02347 peptidase M28 family protein ileal
           peptidase I100 - Rattus norvegicus, EMBL:AF009921;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF02225: PA domain
          Length = 681

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 4   KSWRKVQGYKYIHNADLSPICGIFEDIRTSCQHLREYNDTTYRAVGVRD 52
           KS   ++  K  HN D+S +    ED+ T+ +H+    +    A+ VR+
Sbjct: 546 KSAEDLENEKLGHNIDVSTLIKSIEDLSTAAKHISLEKEAIKGALKVRE 594


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 24  CGIFEDIRTSCQHLREYNDTTYRAVGVRDCYITRYAGFVK 63
           C  FE    + Q +RE ND ++ A+    C ++++   VK
Sbjct: 333 CSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVK 372


>At5g67630.1 68418.m08527 DNA helicase, putative similar to
           RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
           reptin [Drosophila melanogaster] GI:7243682
          Length = 469

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 3   AKSWRKVQGYKYIHNADLSPICGIFEDIRTSCQHLREY 40
           A S +K +G K +   D+  +  +F D+R S Q+L EY
Sbjct: 407 ALSCQKRKG-KVVEVEDIQRVYRLFLDVRRSMQYLVEY 443


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,269
Number of Sequences: 28952
Number of extensions: 47074
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 12,070,560
effective HSP length: 45
effective length of query: 20
effective length of database: 10,767,720
effective search space: 215354400
effective search space used: 215354400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)