Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
         (297 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      40   3e-05
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      40   3e-05
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.68 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 162 AEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNP 221
           +++DK    ++ +N +        G   ++ K P+  K+ L+AF L+  + R+KV A   
Sbjct: 445 SKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK-PHI-KKPLNAFMLYMKEMRAKVVAECT 502

Query: 222 EYTMGDIAKELGRRWAAADPETKAKYDALSEKDK 255
                 I + LGRRW A   E +AKY  L+ +++
Sbjct: 503 LKESAAINQILGRRWHALGREEQAKYYELARRER 536



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 137 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYV--PPKDMKVRGRKRQQMKD 194
           AA ++    RW+ +  +E+ +++E+A +++    L MQ Y     +    RG+KR++ +D
Sbjct: 507 AAINQILGRRWHALGREEQAKYYELARRER---QLHMQLYPDWSSRANATRGKKRKRKQD 563

Query: 195 P 195
           P
Sbjct: 564 P 564


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 162 AEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNP 221
           +++DK    ++ +N +        G   ++ K P+  K+ L+AF L+  + R+KV A   
Sbjct: 337 SKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK-PHI-KKPLNAFMLYMKEMRAKVVAECT 394

Query: 222 EYTMGDIAKELGRRWAAADPETKAKYDALSEKDK 255
                 I + LGRRW A   E +AKY  L+ +++
Sbjct: 395 LKESAAINQILGRRWHALGREEQAKYYELARRER 428



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 137 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYV--PPKDMKVRGRKRQQMKD 194
           AA ++    RW+ +  +E+ +++E+A +++    L MQ Y     +    RG+KR++ +D
Sbjct: 399 AAINQILGRRWHALGREEQAKYYELARRER---QLHMQLYPDWSSRANATRGKKRKRKQD 455

Query: 195 P 195
           P
Sbjct: 456 P 456


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 173 MQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGN 220
           M N + P +   R + +Q  K P+  +RS S   L   D  +  ++ N
Sbjct: 675 MSNNILPPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKDGTTVPESNN 722


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 92  TVNKARMPRSRPYNKPRGRMTAY 114
           T   ARM R R YN P  +   Y
Sbjct: 338 TQGVARMSRGRQYNYPNPQQQYY 360


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 92  TVNKARMPRSRPYNKPRGRMTAY 114
           T   ARM R R YN P  +   Y
Sbjct: 286 TQGVARMSRGRQYNYPNPQQQYY 308


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 214 SKVKAGNPEYTMGDIAKELGRRWAAADPETKA-KYDALSEKDKARYDREMTAYKKGP 269
           S+ + G  ++T  DI   L      A    K  K    S+KD   YDR +   +K P
Sbjct: 532 SQKRPGAGKFTPEDINPSLCTHIIYAFATLKDHKLAEASDKDPEMYDRVVALREKNP 588


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,572
Number of Sequences: 317
Number of extensions: 1663
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 297
length of database: 114,650
effective HSP length: 56
effective length of query: 241
effective length of database: 96,898
effective search space: 23352418
effective search space used: 23352418
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)