Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
(297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 75 2e-14
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 48 2e-06
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 39 0.001
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 39 0.001
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 38 0.002
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 29 1.1
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 29 1.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 27 4.3
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 5.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 5.7
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.9
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 9.9
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 74.5 bits (175), Expect = 2e-14
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
R K + KDPN PKR++SAF F + R K+K NP+ T G + LG+RW +
Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTER 62
Query: 245 AKYDALSEKDKARYDREMTAY 265
Y+ + +DK RY+RE Y
Sbjct: 63 EPYEEKARQDKERYERERKEY 83
Score = 52.0 bits (119), Expect = 1e-07
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 ARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 155
A+ R + N P+ M+A+ FF RE+ K PD + F +RW ++ E+
Sbjct: 5 AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDAT--FGQLGSLLGKRWKELTSTER 62
Query: 156 QRFHEMAEQDKHRFDLEMQNY 176
+ + E A QDK R++ E + Y
Sbjct: 63 EPYEEKARQDKERYERERKEY 83
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVK--AGNPEYTMGDIAKELGRRWAAADPETKAK 246
+++ +DP PKR SA+ LF ++RS++K G + ++ K + +W + + +
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKT 167
Query: 247 YDALSEKDKARYDREMTAY 265
Y+ + K + Y+ EM AY
Sbjct: 168 YEEEASKLREAYEEEMAAY 186
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
++R +P+ +AY F + R E K+ + S +K E+W ++SE +++ +
Sbjct: 110 KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169
Query: 160 EMAEQDKHRFDLEMQNYVPPKD 181
E A + + ++ EM Y K+
Sbjct: 170 EEASKLREAYEEEMAAYNASKE 191
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 200 RSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYD 259
R +AF L+ ++ + + NP ++K +G W E + +Y +SE KA++
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 260 REMTAYKKGP 269
+ YK P
Sbjct: 165 KMYPGYKYQP 174
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 200 RSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYD 259
R +AF L+ ++ + + NP ++K +G W E + +Y +SE KA++
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 260 REMTAYKKGP 269
+ YK P
Sbjct: 165 KMYPGYKYQP 174
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 37.5 bits (83), Expect = 0.002
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCND 211
+ EK+RF E +++ +N K+ G + +++ P+ PK+ SAF LF +
Sbjct: 102 DAEKKRFMETLRSFTPT-EIDSENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILFYKE 160
Query: 212 ERSKVK----AGNPE--YTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREM 262
R+ K G PE T+ + + + W + K + S+ K +YD+ M
Sbjct: 161 LRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDKSKALKEQYDKFM 217
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 138 AFSKKCAERWNTMSEKEKQRFHE--MAEQDKHR 168
A K + WN ++E+EK+ +HE +A ++K R
Sbjct: 224 ALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAR 256
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 102 RPYNKPRGRMTAYAFFVQTC---REEHKKKYPDVSVIFAAFSKKCAE 145
R Y G ++ Y F C R+++KK PD ++F+ S C +
Sbjct: 227 RAYVLATGALSVYLFNEMLCLLARDKYKKPTPDPDLLFSHLSNTCLQ 273
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 159 HEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAF 205
+EM + DK DLE +Y KD + + + N PKR+++ +
Sbjct: 1317 NEMEDLDKME-DLEKPDYAEEKDPYITVMSELRSRIQNVPKRTVTVY 1362
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 139 FSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDP 195
F KK A + SE+++Q F E E D+ ++N + +M+ GRK + P
Sbjct: 227 FEKKPAIGFYDTSEEDRQNFREKREADQK----IIENGIRNNEMESEGRKFGHFEKP 279
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 117 FVQTCREEHKKKYPDVSVIFAAFSKKCAERW 147
FV TC+ H+K+Y + + AFS RW
Sbjct: 169 FVLTCKNLHRKRYSS-DMEYIAFSCSKDRRW 198
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 124 EHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMK 183
E+K + + + K E + SE++K + + + + + N +P K+ +
Sbjct: 36 ENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQSENDESNLIPNKN-E 94
Query: 184 VRGRKRQQMKDPNAPKRSLSAF 205
VR + DPN+P S+ +F
Sbjct: 95 VRVKLADLQADPNSPLFSVKSF 116
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 138 AFSKKCAERWNTMSEKEKQRFHEMA--EQDKHRFDLEMQNYVPPKDMKVRGRKRQ 190
+ S+ + W S + K+ + +++ E+ KH + Y P K VR R ++
Sbjct: 41 SISRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYKYTPKKRSTVRRRHKK 95
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 211 DERSKVKAGNPEY--TMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
D+ + G+PE T +I +LG+ W A D K + +A Y + Y++
Sbjct: 864 DQDKQRVTGDPEARATKNEIRAKLGKTWRALDSLGKQPWVDEINARRANYSTRLEEYQR 922
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,223
Number of Sequences: 5004
Number of extensions: 33947
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 17
length of query: 297
length of database: 2,362,478
effective HSP length: 72
effective length of query: 225
effective length of database: 2,002,190
effective search space: 450492750
effective search space used: 450492750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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