Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 77 2e-14
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 72 6e-13
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 63 3e-10
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 60 2e-09
06_03_1487 + 30477615-30477658,30477778-30477891,30477941-304780... 58 1e-08
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 52 7e-07
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 51 1e-06
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 48 1e-05
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 47 2e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 42 6e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 39 0.006
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 32 0.48
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 32 0.48
05_03_0417 - 13690127-13690229,13690644-13690705,13691248-136913... 31 0.84
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601... 31 1.1
12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223... 30 2.6
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882 30 2.6
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 29 3.4
11_01_0294 + 2212807-2212876,2213664-2213843,2214505-2214594,221... 28 7.8
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 28 7.8
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246
RK ++ KDPNAPKR+++ F F ER+ +K NPE +IAK+LG RW E K
Sbjct: 547 RKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQP 606
Query: 247 YDALSEKDKARYDREMTAYK 266
Y S+ DK RY E AY+
Sbjct: 607 YVEQSQVDKKRYAEESAAYR 626
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154
K + + + N P+ + + +F + R K P+++ +KK ERW M+ +E
Sbjct: 546 KRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELAT--TEIAKKLGERWQKMTAEE 603
Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176
KQ + E ++ DK R+ E Y
Sbjct: 604 KQPYVEQSQVDKKRYAEESAAY 625
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 71.7 bits (168), Expect = 6e-13
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246
RK ++ KDPNAPKR+++ F F ER +K NP+ +IAK+LG W E K
Sbjct: 588 RKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQP 647
Query: 247 YDALSEKDKARYDREMTAYK 266
Y S+ DK RY++E Y+
Sbjct: 648 YIQQSQVDKKRYEKESAVYR 667
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 94 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEK 153
+K + + + N P+ MT + +F R K PD+ +KK E W M+ +
Sbjct: 586 DKRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPT--TEIAKKLGEMWQKMTGE 643
Query: 154 EKQRFHEMAEQDKHRFDLEMQNY 176
EKQ + + ++ DK R++ E Y
Sbjct: 644 EKQPYIQQSQVDKKRYEKESAVY 666
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGD--IAKELGRRWAAADPE 242
R RK+ DPN PK + S + F D+ K+K PEY D I+K +G RW PE
Sbjct: 363 RRRKKLSTTDPNHPKPNRSGYNFFFQDQHRKLK---PEYPGQDRLISKMIGERWNNLGPE 419
Query: 243 TKAKYDALSEKDKARYDREMTAYKK 267
KA Y +DKARY R++ Y++
Sbjct: 420 DKAVYQEKGVEDKARYQRQLALYRE 444
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164
N P+ + Y FF Q ++H+K P+ SK ERWN + ++K + E +
Sbjct: 374 NHPKPNRSGYNFFFQ---DQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVE 430
Query: 165 DKHRFDLEMQNY 176
DK R+ ++ Y
Sbjct: 431 DKARYQRQLALY 442
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 60.5 bits (140), Expect = 2e-09
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 123 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDM 182
EE ++ + + K+ AE + E++ QR + + +F E + D
Sbjct: 207 EERYRQEKEAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADDDGDGGDN 266
Query: 183 KV---RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAA 239
K +G+K+++ KDP+ PK+ +SA+F++ R+ + A + + +I + G W A
Sbjct: 267 KKASKKGKKKKKEKDPSKPKQPMSAYFVYTQQRRAALVA--EKKNVPEIGRITGEEWKAM 324
Query: 240 DPETKAKYDALSEKDKARYDREMTAYKK 267
KA ++A + K + Y EM AY++
Sbjct: 325 SEAEKAPFEAAARKQREEYQVEMAAYRQ 352
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246
+K+ + K + K+ A+ L+C D+ +++K +P+ +++ LG +W A E K
Sbjct: 146 KKKGKGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQP 205
Query: 247 YDALSEKDKARY 258
Y+ ++K Y
Sbjct: 206 YEERYRQEKEAY 217
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Query: 126 KKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVR 185
+K+ + V AA+ ++ E ++E+++ M ++ + + K K
Sbjct: 337 RKQREEYQVEMAAYRQRKQEEAACQEKEEEEQKKIMKQEALQLLKKKEKTDNIIKKTKEE 396
Query: 186 GRKRQ-----QMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAAD 240
RK++ DPN PK+ S+F LF + R ++ P + + +W
Sbjct: 397 QRKKKVGGAAAAADPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELG 456
Query: 241 PETKAKYDALSEKDKARYDREMTAYKK 267
K ++ + + A Y R+M Y K
Sbjct: 457 EAEKQAWNGKAAEAMAAYKRDMEEYTK 483
Score = 39.5 bits (88), Expect = 0.003
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 105 NKPRGRMTAYAFFVQTCREE---HKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEM 161
+KP+ M+AY + Q R KK P++ I E W MSE EK F
Sbjct: 283 SKPKQPMSAYFVYTQQRRAALVAEKKNVPEIGRI-------TGEEWKAMSEAEKAPFEAA 335
Query: 162 AEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNP 221
A + + + +EM Y K + +++++ + K+ + +K
Sbjct: 336 ARKQREEYQVEMAAYRQRKQEEAACQEKEEEEQKKIMKQEALQLLKKKEKTDNIIKKTKE 395
Query: 222 EYTMGDIAKELGRRWAAADPETKAK 246
E K++G AAADP K
Sbjct: 396 EQR----KKKVGGAAAAADPNRPKK 416
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 113 AYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRF 169
AY + + E KK+ PD F S +W + +EKQ + E Q+K +
Sbjct: 163 AYVLWCKDQWNEIKKESPDAD--FKEVSNALGAKWKALGAEEKQPYEERYRQEKEAY 217
>06_03_1487 +
30477615-30477658,30477778-30477891,30477941-30478028,
30478186-30478230,30478330-30478410,30478498-30478608,
30478907-30478927
Length = 167
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFC----------NDERSKVKAGNPE-YTMGDIAKELG 233
+GRK + KDPN PKR+ SAFF+F + R + K NP+ ++ + K G
Sbjct: 29 KGRKGKAGKDPNKPKRAPSAFFVFMGFSFDLVSLREEFRKEFKEKNPKNKSVAAVGKAAG 88
Query: 234 RRWAAADPETKAKYDALSEKDKARYDREMTAYKKG 268
RW + KA Y A + K KA Y++ + AY KG
Sbjct: 89 DRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKG 123
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 178 PPKDMKVRGRKR-QQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY-TMGDIAKELGRR 235
PP+ RK+ Q + D PK+ +AFF F D R K NP +M ++ K G +
Sbjct: 28 PPQPQPPPSRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEK 87
Query: 236 WAAADPETKAKYDALSEKDKARYDREMTAYKK 267
W E + KY ++ + +A Y++ + + K
Sbjct: 88 WNTMTFEERVKYYDIATEKRAEYEKAVAEFDK 119
Score = 46.0 bits (104), Expect = 4e-05
Identities = 18/76 (23%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 106 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQD 165
+P+ TA+ +F++ R+ +K++ P V + K C E+WNTM+ +E+ +++++A +
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSM-QEVGKACGEKWNTMTFEERVKYYDIATEK 106
Query: 166 KHRFDLEMQNYVPPKD 181
+ ++ + + K+
Sbjct: 107 RAEYEKAVAEFDKKKE 122
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 178 PPKDMKVRGRKRQ--QMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRR 235
PP RGR+R+ + +DP P+ + SA+ F ++ ++KA +P + + ++ +G
Sbjct: 205 PPPPPPARGRRRRGRRQRDPAQPRPNRSAYNFFFKEKHPELKATHP-HREREYSRMIGDA 263
Query: 236 WAAADPETKAKYDALSEKDKARYDREMTAYKK 267
W + K Y S +DK RY REM Y +
Sbjct: 264 WNRLAADDKMVYYRHSAEDKERYKREMQEYNE 295
Score = 43.2 bits (97), Expect = 3e-04
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154
+ R R R +PR +AY FF + E K +P +S+ + WN ++ +
Sbjct: 215 RRRGRRQRDPAQPRPNRSAYNFFFKEKHPELKATHPHRE---REYSRMIGDAWNRLAADD 271
Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176
K ++ + +DK R+ EMQ Y
Sbjct: 272 KMVYYRHSAEDKERYKREMQEY 293
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 159 HEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN-------APKRSLSAFFLFCND 211
H + DK R LE Q V + ++V K++ K+ N KR +AFFLF +D
Sbjct: 48 HNCSLDDKIRISLEAQ--VVEQAVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSD 105
Query: 212 ERSKVKAGNPE-YTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
R + KA +P+ ++ +AKE G RW + E K Y + + KA Y
Sbjct: 106 FRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 112 TAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRF 169
TA+ F+ R+E+K ++PD + +A +K+ ERW +MS+++K+ + + A + K +
Sbjct: 97 TAFFLFMSDFRKEYKAEHPDNKSV-SAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 106 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQD 165
KP+ +A+ F+ R+E++ +PD + AA SK E+W MSE+EK + + A Q
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSV-AAVSKAAGEKWRAMSEQEKAPYVDKAGQK 90
Query: 166 KHRFDLEMQNY 176
K ++ N+
Sbjct: 91 KQDYEKTKANF 101
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 188 KRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPE-YTMGDIAKELGRRWAAADPETKAK 246
KR++ PKR SAFF+F ++ R + +A +P+ ++ ++K G +W A + KA
Sbjct: 23 KRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAP 82
Query: 247 YDALSEKDKARYDREMTAYKK 267
Y + + K Y++ + K
Sbjct: 83 YVDKAGQKKQDYEKTKANFDK 103
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 41.9 bits (94), Expect = 6e-04
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY-TMGDIAKELGRRW--------- 236
RK + KDPN PKR SAFF+F R K +P + I K G +W
Sbjct: 24 RKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIRG 83
Query: 237 ---AAADPETKAKYDALSEKDKARYDREMTAY 265
A + KA + +EK KA Y +++ AY
Sbjct: 84 YVVVAVPCKDKAPFVTKAEKLKAEYTKKIDAY 115
Score = 34.7 bits (76), Expect = 0.090
Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSE 152
NKP+ +A+ F++ R+++K+K+P+V + + K ++W +M++
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQV-SVIGKAGGDKWKSMTD 79
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 38.7 bits (86), Expect = 0.006
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 181 DMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYT-MGDIAKELGRRWAAA 239
+ K G KR++ PKR L+ FF F + R + +P + + K G +W A
Sbjct: 9 EFKAAG-KRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAM 67
Query: 240 DPETKAKY-----DALSEKDKARYDREMTAYKK 267
E KA+Y D S+ A +E T+ KK
Sbjct: 68 SDEEKAQYGGKKPDGESKPAAASKKKESTSSKK 100
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 106 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
KP+ +T + F+ R ++ +K+P+ + AA +K E+W MS++EK ++
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGV-AAVTKAAGEKWRAMSDEEKAQY 75
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237
+ P +R SA+ F DE ++KAGNP+ + + + WA
Sbjct: 187 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 231
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237
+ P +R SA+ F DE ++KAGNP+ + + + WA
Sbjct: 159 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 203
>05_03_0417 -
13690127-13690229,13690644-13690705,13691248-13691330,
13691797-13691911,13692228-13692287,13693375-13693474,
13694781-13694965
Length = 235
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 214 SKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKKGP 269
+K+ P+ T+ D+A L RW A K + + S+K+K + +R + KGP
Sbjct: 73 AKIAMNLPDKTVRDVA--LRCRWMAKKESNKKRKEESSKKNKEKKERANDSSSKGP 126
>03_02_0157 +
6008840-6008908,6009795-6009932,6010921-6011014,
6011313-6011361,6015190-6015265,6015466-6015558,
6015786-6015851
Length = 194
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 192 MKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALS 251
+K P R SA+ F +E ++KA P+ + + WA DP + +
Sbjct: 99 VKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSN 158
Query: 252 EKDKAR 257
+ R
Sbjct: 159 SNPEPR 164
>12_01_0295 +
2235209-2235263,2236182-2236361,2236478-2236567,
2236947-2237131,2237200-2237358,2237437-2237589,
2237938-2238264
Length = 382
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 213 RSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+++ + G E D K ++++ D E + + +L+E+DKA Y ++ YK
Sbjct: 291 KARAELGQTESAREDFLK--AKKYSPEDKEIQRELRSLAEQDKALYQKQKELYK 342
>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
Length = 785
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 168 RFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSK----VKAGNPEY 223
R LE +P K KV+G ++ Q DP A K F+L+ + + ++ N +
Sbjct: 656 RITLEKPLLLPSKKRKVKGNQKDQ--DPVAEKIDQEVFYLYATVSQEQATELLECDNDKS 713
Query: 224 TMGDIAKELGRRWAAADPETKAKYDALSE 252
+ + K+LG + D D+ E
Sbjct: 714 RIAVLCKDLGVKLMGYDSTYDVLLDSFRE 742
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237
+R SA+ F DE ++KA NP+ T + + WA
Sbjct: 170 QRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 208
>11_01_0294 +
2212807-2212876,2213664-2213843,2214505-2214594,
2215054-2215238,2215399-2215521,2215593-2215745,
2216090-2216416
Length = 375
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 213 RSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+++ + G E D K ++ + D E + + +L+E+DKA Y ++ YK
Sbjct: 284 KARAELGQTESAREDFLK--AKKHSPEDKEIQRELRSLAEQDKALYQKQKELYK 335
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 28.3 bits (60), Expect = 7.8
Identities = 29/147 (19%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 122 REEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD---LEMQNYVP 178
R++ +K + + ++ + + + + + SEK K H+ + + K R+D E +
Sbjct: 166 RKDKRKAHGNNNIDSGSSGSEESGKHRSHSEKRK---HKKSRKHKRRYDDSSDESNSESD 222
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
K+ K R ++ ++++ +R + + SK+K + E D+A +L + +
Sbjct: 223 DKESKRRRKEEKRLRKEERRRRREERHRRKADRQASKLKLKHAETV--DMASDLEKDRES 280
Query: 239 ---ADPETKAKYDALSEKDKARYDREM 262
AD K Y+ E D+ + + E+
Sbjct: 281 DSDADARKKGSYNGRDESDQQKLEIEL 307
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,434,361
Number of Sequences: 37544
Number of extensions: 211260
Number of successful extensions: 724
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 34
length of query: 297
length of database: 14,793,348
effective HSP length: 82
effective length of query: 215
effective length of database: 11,714,740
effective search space: 2518669100
effective search space used: 2518669100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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