BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high mobility group) box, IPR000135|High mobility group box HMG1 and HMG2, IPR009071|High mobility group box (297 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g28730.1 68416.m03587 structure-specific recognition protein ... 72 4e-13 At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 70 2e-12 At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 65 5e-11 At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 65 5e-11 At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 65 5e-11 At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 62 3e-10 At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 60 1e-09 At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 60 1e-09 At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 58 9e-09 At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 53 3e-07 At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro... 50 2e-06 At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 48 6e-06 At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 46 3e-05 At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro... 39 0.005 At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 35 0.057 At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) i... 32 0.53 At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic... 31 1.2 At4g00170.1 68417.m00018 vesicle-associated membrane family prot... 31 1.2 At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor... 31 1.2 At2g36270.1 68415.m04452 bZIP transcription factor family protei... 30 2.1 At1g56660.1 68414.m06516 expressed protein 30 2.1 At1g58225.1 68414.m06614 expressed protein 29 2.8 At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 29 3.7 At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laev... 29 4.9 At2g26580.2 68415.m03189 plant-specific transcription factor YAB... 28 6.5 At2g26580.1 68415.m03188 plant-specific transcription factor YAB... 28 6.5 At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 28 8.6 At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 28 8.6 At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 28 8.6 At3g21640.1 68416.m02729 FKBP-type peptidyl-prolyl cis-trans iso... 28 8.6 At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 8.6 At1g78810.2 68414.m09186 expressed protein 28 8.6 At1g78810.1 68414.m09185 expressed protein 28 8.6 At1g23420.1 68414.m02934 inner no outer protein (INO) identical ... 28 8.6 >At3g28730.1 68416.m03587 structure-specific recognition protein 1 / high mobility group protein / HMG protein nearly identical to SP|Q05153 Structure-specific recognition protein 1 homolog (HMG protein) {Arabidopsis thaliana}; contains Pfam profile PF00505: HMG (high mobility group) box; contains Pfam profile PF03531: Structure-specific recognition protein Length = 646 Score = 72.1 bits (169), Expect = 4e-13 Identities = 31/80 (38%), Positives = 47/80 (58%) Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246 +K ++ KDPNAPKR++S F F ER +K +P G++ K LG +W + K Sbjct: 551 KKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEP 610 Query: 247 YDALSEKDKARYDREMTAYK 266 Y+A ++ DK RY E++ YK Sbjct: 611 YEAKAQVDKQRYKDEISDYK 630 Score = 54.0 bits (124), Expect = 1e-07 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 94 NKARMPRSRPY-NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSE 152 +K + P+ + N P+ M+ + FF Q R+ KK++P ++ F K ++W MS Sbjct: 548 SKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIA--FGEVGKVLGDKWRQMSA 605 Query: 153 KEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKV 184 +K+ + A+ DK R+ E+ +Y P+ M V Sbjct: 606 DDKEPYEAKAQVDKQRYKDEISDYKNPQPMNV 637 >At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGbeta1) / HMG protein beta1 nearly identical to HMG protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359 Length = 144 Score = 69.7 bits (163), Expect = 2e-12 Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 177 VPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPE-YTMGDIAKELGRR 235 V K K GR + KDPN PKR SAFF+F D R K NP+ ++ + K G + Sbjct: 17 VTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDK 76 Query: 236 WAAADPETKAKYDALSEKDKARYDREMTAYKK 267 W + KA Y A +EK K Y++ + AY K Sbjct: 77 WKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108 Score = 41.1 bits (92), Expect = 9e-04 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164 NKP+ +A+ F++ RE KK+ P + A K ++W ++S+ EK + AE+ Sbjct: 36 NKPKRPASAFFVFMEDFRETFKKENPKNKSV-ATVGKAAGDKWKSLSDSEKAPYVAKAEK 94 Query: 165 DKHRFDLEMQNY 176 K ++ ++ Y Sbjct: 95 RKVEYEKNIKAY 106 >At3g51880.2 68416.m05690 high mobility group protein alpha (HMGalpha) / HMG protein alpha nearly identical to HMG protein (HMGalpha) [Arabidopsis thaliana] GI:2832357; contains Pfam profile PF00505: HMG (high mobility group) box Length = 185 Score = 65.3 bits (152), Expect = 5e-11 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY-TMGDIAKELGRRWAAADPETKA 245 ++++ KDPN PKR+ SAFF+F D R K NP + + K G++W + KA Sbjct: 42 KEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKA 101 Query: 246 KYDALSEKDKARYDREMTAYKK 267 Y+ + K KA Y+++M AY K Sbjct: 102 PYEEKAAKRKAEYEKQMDAYNK 123 Score = 46.4 bits (105), Expect = 2e-05 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164 NKP+ +A+ F++ R KK+ P+V + +A K ++W +MS+ EK + E A + Sbjct: 51 NKPKRAPSAFFVFLEDFRVTFKKENPNVKAV-SAVGKAGGQKWKSMSQAEKAPYEEKAAK 109 Query: 165 DKHRFDLEMQNY 176 K ++ +M Y Sbjct: 110 RKAEYEKQMDAY 121 >At3g51880.1 68416.m05689 high mobility group protein alpha (HMGalpha) / HMG protein alpha nearly identical to HMG protein (HMGalpha) [Arabidopsis thaliana] GI:2832357; contains Pfam profile PF00505: HMG (high mobility group) box Length = 178 Score = 65.3 bits (152), Expect = 5e-11 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY-TMGDIAKELGRRWAAADPETKA 245 ++++ KDPN PKR+ SAFF+F D R K NP + + K G++W + KA Sbjct: 42 KEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKA 101 Query: 246 KYDALSEKDKARYDREMTAYKK 267 Y+ + K KA Y+++M AY K Sbjct: 102 PYEEKAAKRKAEYEKQMDAYNK 123 Score = 46.4 bits (105), Expect = 2e-05 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164 NKP+ +A+ F++ R KK+ P+V + +A K ++W +MS+ EK + E A + Sbjct: 51 NKPKRAPSAFFVFLEDFRVTFKKENPNVKAV-SAVGKAGGQKWKSMSQAEKAPYEEKAAK 109 Query: 165 DKHRFDLEMQNY 176 K ++ +M Y Sbjct: 110 RKAEYEKQMDAY 121 >At2g17560.1 68415.m02032 high mobility group protein gamma (HMGgamma) / HMG protein gamma nearly identical to HMG protein (HMGgamma) [Arabidopsis thaliana] GI:2832355 Length = 138 Score = 65.3 bits (152), Expect = 5e-11 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 182 MKVRGRK--RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNP-EYTMGDIAKELGRRWAA 238 +K RGRK ++ KDPN PKR SAFF+F D R + NP ++ + K G RW A Sbjct: 17 LKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKA 76 Query: 239 ADPETKAKYDALSEKDKARYDREMTAY 265 E KA Y A +E K Y + + Y Sbjct: 77 MTDEDKAPYVAKAESRKTEYIKNVQQY 103 Score = 35.1 bits (77), Expect = 0.057 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154 KA + N+P+ +A+ F++ R+E P+ + A K RW M++++ Sbjct: 23 KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSV-ATVGKAAGARWKAMTDED 81 Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176 K + AE K + +Q Y Sbjct: 82 KAPYVAKAESRKTEYIKNVQQY 103 >At4g11080.1 68417.m01800 high mobility group (HMG1/2) family protein similar to SP|P40618 High mobility group protein HMG2A {Gallus gallus}; contains Pfam profile PF00505: HMG (high mobility group) box Length = 446 Score = 62.5 bits (145), Expect = 3e-10 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246 +K +++KDP PK+ +SA+ ++ N+ R+ +K N ++AK G W E KA Sbjct: 235 KKAKKIKDPLKPKQPISAYLIYANERRAALKGENKSVI--EVAKMAGEEWKNLSEEKKAP 292 Query: 247 YDALSEKDKARYDREMTAYKK 267 YD +++K+K Y +EM YK+ Sbjct: 293 YDQMAKKNKEIYLQEMEGYKR 313 Score = 57.6 bits (133), Expect = 9e-09 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 141 KKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQ---NYVPPKDMKVRGRKRQQMKDPNA 197 K+ E +KE++ F ++ +Q+ + + + N + + +K+ + DPN Sbjct: 312 KRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKKTKETAKNKKKNENVDPNK 371 Query: 198 PKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKAR 257 PK+ S++FLFC D R V +P + + +W E K Y++ + + Sbjct: 372 PKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEA 431 Query: 258 YDREMTAYKK 267 Y +E+ Y K Sbjct: 432 YKKEVEEYNK 441 Score = 47.6 bits (108), Expect = 1e-05 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244 +G+K++ KD KR + + L+C D ++VK NPE + + LG +W E K Sbjct: 118 KGKKKK--KDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEK 175 Query: 245 AKYDALSEKDKARYDREMTAYKK 267 Y+ + DK Y + +T K+ Sbjct: 176 KPYEEKYQADKEAYLQVITKEKR 198 Score = 43.2 bits (97), Expect = 2e-04 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 94 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEK 153 NK + + + KP+ ++AY + R K + + SVI A K E W +SE+ Sbjct: 233 NKKKAKKIKDPLKPKQPISAYLIYANERRAALKGE--NKSVIEVA--KMAGEEWKNLSEE 288 Query: 154 EKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQ 191 +K + +MA+++K + EM+ Y K+ + +K+++ Sbjct: 289 KKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEE 326 >At4g35570.1 68417.m05054 high mobility group protein delta (HMGdelta) / HMG protein delta identical to HMG protein (HMGdelta) [Arabidopsis thaliana] GI:2832363 Length = 125 Score = 60.5 bits (140), Expect = 1e-09 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 182 MKVRGRK-RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPE-YTMGDIAKELGRRWAAA 239 +KVRG K ++ KDPN PK+ S FF+F +D R + NP+ ++G++ + G++W Sbjct: 17 LKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTM 76 Query: 240 DPETKAKYDALSEKDKARYDREMTAY 265 E +A + A S+ K Y M Y Sbjct: 77 TEEERAPFVAKSQSKKTEYAVTMQQY 102 Score = 35.5 bits (78), Expect = 0.043 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159 +++ N+P+ + + F+ R+E PD + + ++W TM+E+E+ F Sbjct: 27 KTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSV-GNVGRAAGKKWKTMTEEERAPFV 85 Query: 160 EMAEQDKHRFDLEMQNY 176 ++ K + + MQ Y Sbjct: 86 AKSQSKKTEYAVTMQQY 102 >At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGbeta2) / HMG protein beta2 nearly identical to HMG protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361 Length = 141 Score = 60.5 bits (140), Expect = 1e-09 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPE-YTMGDIAKELGRRWAAADPETKAKYDALS 251 KDPN PKR SAFF+F D R K +P+ ++ + K G +W + KA Y A + Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89 Query: 252 EKDKARYDREMTAYKK 267 +K K Y++ M AY K Sbjct: 90 DKRKVEYEKNMKAYNK 105 >At4g23800.1 68417.m03422 high mobility group (HMG1/2) family protein similar to HMG2B [Homo sapiens] GI:32335; contains Pfam profile PF00505: HMG (high mobility group) box Length = 456 Score = 57.6 bits (133), Expect = 9e-09 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 152 EKEKQRFHEMAEQDKHRFDLEMQ----NYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFL 207 ++EK+ + + K R +E+ N+V + + +K ++ KDP PK +SAF + Sbjct: 206 KREKEAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNK-KKNKKEKDPLKPKHPVSAFLV 264 Query: 208 FCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267 + N+ R+ ++ N ++ ++AK G W + KA Y+ +++K+K Y + M YK+ Sbjct: 265 YANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKR 322 Score = 56.0 bits (129), Expect = 3e-08 Identities = 27/88 (30%), Positives = 41/88 (46%) Query: 180 KDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAA 239 K K +K+ + DPN PK+ S++FLF DER K+ P + + +W Sbjct: 361 KKEKATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKEL 420 Query: 240 DPETKAKYDALSEKDKARYDREMTAYKK 267 E K Y+ + K Y +E+ AY K Sbjct: 421 SEEEKQVYNGKAAKLMEAYKKEVEAYNK 448 Score = 45.6 bits (103), Expect = 4e-05 Identities = 21/70 (30%), Positives = 37/70 (52%) Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYD 248 +++ KD KR S++ L+C D+ ++VK NPE + + LG +W + E K Y+ Sbjct: 129 KKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYE 188 Query: 249 ALSEKDKARY 258 + +K Y Sbjct: 189 ERYQVEKEAY 198 Score = 36.7 bits (81), Expect = 0.019 Identities = 21/98 (21%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 94 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEK 153 NK + + + KP+ ++A+ + R +++ + SV+ A K E W +S+K Sbjct: 242 NKKKNKKEKDPLKPKHPVSAFLVYANERRAALREE--NKSVVEVA--KITGEEWKNLSDK 297 Query: 154 EKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQ 191 +K + ++A+++K + M+ Y K+ + +K+++ Sbjct: 298 KKAPYEKVAKKNKETYLQAMEEYKRTKEEEALSQKKEE 335 Score = 29.1 bits (62), Expect = 3.7 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164 NKP+ ++Y F + R++ ++ P + A + + +W +SE+EKQ ++ A + Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNN--ATVTALISLKWKELSEEEKQVYNGKAAK 434 Query: 165 DKHRFDLEMQNY 176 + E++ Y Sbjct: 435 LMEAYKKEVEAY 446 >At2g34450.1 68415.m04227 high mobility group (HMG1/2) family protein similar to HMG protein [Arabidopsis thaliana] GI:2832361; contains Pfam profile PF00505: HMG (high mobility group) box Length = 151 Score = 52.8 bits (121), Expect = 3e-07 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 178 PPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY-TMGDIAKELGRRW 236 P + K +K+ PK+ +AFF F +D R + + NP+ +M +I K G +W Sbjct: 43 PLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKW 102 Query: 237 AAADPETKAKYDALSEKDKARYDREMTAYKK 267 E K KY ++ + + + R MT Y K Sbjct: 103 KTMTYEEKVKYYDIATEKREEFHRAMTEYTK 133 Score = 50.8 bits (116), Expect = 1e-06 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 107 PRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDK 166 P+ TA+ FF+ R++++++ PDV + K C E+W TM+ +EK +++++A + + Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSM-REIGKTCGEKWKTMTYEEKVKYYDIATEKR 121 Query: 167 HRFDLEMQNY 176 F M Y Sbjct: 122 EEFHRAMTEY 131 >At1g76110.1 68414.m08838 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein low similarity to high mobility group protein [Plasmodium falciparum] GI:790198; contains Pfam profiles PF00505: HMG (high mobility group) box, PF01388: ARID/BRIGHT DNA binding domain Length = 338 Score = 50.0 bits (114), Expect = 2e-06 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246 R+ ++ +DPN PK + S + F ++ K+K+ P + K +G W+ E + Sbjct: 244 RRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKER-EFTKLIGESWSNLSTEERMV 302 Query: 247 YDALSEKDKARYDREMTAYKK 267 Y + KDK RY RE+ Y++ Sbjct: 303 YQDIGLKDKERYQRELNEYRE 323 Score = 39.5 bits (88), Expect = 0.003 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154 + R R N P+ + Y FF + K YP+ F+K E W+ +S +E Sbjct: 243 RRRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKE---REFTKLIGESWSNLSTEE 299 Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176 + + ++ +DK R+ E+ Y Sbjct: 300 RMVYQDIGLKDKERYQRELNEY 321 >At5g23420.1 68418.m02747 high mobility group (HMG1/2) family protein similar to high mobility group protein 2 HMG2 [Ipomoea nil] GI:1052956; contains Pfam profile PF00505: HMG (high mobility group) box Length = 241 Score = 48.4 bits (110), Expect = 6e-06 Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238 PK +K +++ N PKR L+AFF+F +D R K+ + D AK G +W + Sbjct: 96 PKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKS 155 Query: 239 ADPETKAKYDALSEKDKARYDREM 262 E K Y + + KA Y++ + Sbjct: 156 LTEEEKKVYLDKAAELKAEYNKSL 179 Score = 33.5 bits (73), Expect = 0.17 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164 NKP+ +TA+ F+ R+ K ++ AA K E+W +++E+EK+ + + A + Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAA--KIGGEKWKSLTEEEKKVYLDKAAE 170 Query: 165 DKHRFDLEMQN 175 K ++ +++ Sbjct: 171 LKAEYNKSLES 181 >At1g04880.1 68414.m00485 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein low similarity to SP|O15347|HMG4_HUMAN High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam profiles PF00505: HMG (high mobility group) box, PF01388: ARID/BRIGHT DNA binding domain Length = 448 Score = 46.0 bits (104), Expect = 3e-05 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 148 NTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMK--DPNAPKRSLSAF 205 NT+S + Q+ H + + Q + R RK+ ++K DP+ PK + S + Sbjct: 212 NTVSYQTPQQSHGVLPNTLN-ISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGY 270 Query: 206 FLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAY 265 F ++ +++K +P DI++ +G W + + K Y + +DK RY EM Y Sbjct: 271 NFFFAEQHARLKPLHPGKDR-DISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDY 329 Query: 266 KK 267 ++ Sbjct: 330 RE 331 Score = 38.3 bits (85), Expect = 0.006 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154 K+ + R P + P+ + Y FF E+H + P S+ E WN ++E E Sbjct: 252 KSEIKRRDP-DHPKPNRSGYNFFFA---EQHARLKPLHPGKDRDISRMIGELWNKLNEDE 307 Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176 K + A +DK R+ EM++Y Sbjct: 308 KLIYQGKAMEDKERYRTEMEDY 329 >At3g13350.1 68416.m01680 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein low similarity to Dead Ringer Protein Chain A Dna-Binding Domain (GI:6573608), Arid-Dna Complex (GI:20150982) from [Drosophila melanogaster]; contains Pfam profiles PF00505: HMG (high mobility group) box, PF01388: ARID/BRIGHT DNA binding domain Length = 319 Score = 38.7 bits (86), Expect = 0.005 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 106 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQD 165 KP+ + Y FF E++ + P+ + +KK W+ ++E EKQ + + +D Sbjct: 237 KPKCHRSGYNFFFA---EQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKD 293 Query: 166 KHRFDLEMQNY 176 R+ +EM Y Sbjct: 294 VERYRIEMLEY 304 Score = 35.5 bits (78), Expect = 0.043 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Query: 185 RGRKRQQMK--DPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGD--IAKELGRRWAAAD 240 R RK+ ++ D PK S + F ++ +++K PEY + I K++G W+ Sbjct: 223 RHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLK---PEYHGQERSITKKIGHMWSNLT 279 Query: 241 PETKAKYDALSEKDKARYDREMTAYK 266 K Y KD RY EM YK Sbjct: 280 ESEKQVYQDKGVKDVERYRIEMLEYK 305 >At1g55650.1 68414.m06370 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein low similarity to Dead Ringer Protein Chain A Dna-Binding Domain (GI:6573608), Arid-Dna Complex (GI:20150982) from [Drosophila melanogaster]; contains Pfam profiles PF00505: HMG (high mobility group) box, PF01388: ARID/BRIGHT DNA binding domain Length = 337 Score = 35.1 bits (77), Expect = 0.057 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154 KA+ + + P+ + T Y FFV K + V + K W +SE + Sbjct: 203 KAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKV---SSPKNFGNMWTNLSESD 259 Query: 155 KQRFHEMAEQDKHRFDLEMQNY 176 ++ ++E + +D R+ +E+ Y Sbjct: 260 RKVYYEKSREDGKRYKMEILQY 281 >At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) identical to transcription factor CRC (CRABS CLAW) GI:4836698 [Arabidopsis thaliana] Length = 181 Score = 31.9 bits (69), Expect = 0.53 Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 192 MKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPET 243 +K P +R SA+ F DE ++K+ NPE + + WA P + Sbjct: 109 VKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNS 160 >At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical to YABBY3 [Arabidopsis thaliana] GI:4928753 Length = 240 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237 + P +R SA+ F +E ++KAGNP+ + + + WA Sbjct: 148 RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWA 192 >At4g00170.1 68417.m00018 vesicle-associated membrane family protein / VAMP family protein similar to VAP27 GI:6688926 [Nicotiana plumbaginifolia] Length = 239 Score = 30.7 bits (66), Expect = 1.2 Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 129 YPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEM 173 + DVS F S+K +E W+ +S+ +++ + K R +LEM Sbjct: 160 FDDVSRTFEETSEKSSEAWSMISKLTEEKTSATQQSQKLRLELEM 204 >At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal floral organs protein (AFO) / filamentous flower protein (FIL) identical to YABBY1 [Arabidopsis thaliana] GI:4928749, abnormal floral organs protein (AFO) [Arabidopsis thaliana] GI:4322477; supporting cDNA gi|4322476|gb|AF087015.1|AF087015 Length = 229 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237 + P +R SA+ F +E ++KAGNP+ + + + WA Sbjct: 136 RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWA 180 >At2g36270.1 68415.m04452 bZIP transcription factor family protein / ABA-responsive element-binding protein, putative similar to ABA-responsive element binding protein 1 (AREB1) GI:9967417 from [Arabidopsis thaliana]; contains a bZIP transcription factor basic domain signature (PDOC00036) Length = 442 Score = 29.9 bits (64), Expect = 2.1 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 138 AFSKKCAERWNTMSEKEKQRFHEMAEQDKHR---FDLEMQNYVPPKDMKVRGRKRQQMKD 194 A++ + N + E+ Q H +AE ++ R + +++ PK K GR R M++ Sbjct: 378 AYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRAQPKLPKSNGRLRTLMRN 437 Query: 195 PNAP 198 P+ P Sbjct: 438 PSCP 441 >At1g56660.1 68414.m06516 expressed protein Length = 522 Score = 29.9 bits (64), Expect = 2.1 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 145 ERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSA 204 E N ++KEK+ HE Q+K + E K+ G + ++ K K+ + Sbjct: 147 EEKNKKADKEKK--HEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEES 204 Query: 205 FFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTA 264 ++E KVK + GD+ KE + D + + S+K+K + E A Sbjct: 205 K----SNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCA 260 Query: 265 YKK 267 +K Sbjct: 261 EEK 263 >At1g58225.1 68414.m06614 expressed protein Length = 143 Score = 29.5 bits (63), Expect = 2.8 Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 103 PYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMA 162 P +P G + FF +++ K +P + F+ E W T+ K + F ++ Sbjct: 33 PSYEPVGSYSTGGFFAVENKDKMLKSFPSYNEYLKRFNLASVEIWQTVRRKCRDSFISLS 92 Query: 163 EQDKHRF 169 + H F Sbjct: 93 IKSLHFF 99 >At2g38800.1 68415.m04764 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 612 Score = 29.1 bits (62), Expect = 3.7 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 164 QDKHRFDLE-MQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPE 222 Q + RF E ++N P M R + R+++KD + +S + L +D KV G+P Sbjct: 18 QPETRFGQEHLKNLGPEMMMMKRTKPRRKLKDNHVSSQSGKSQELPKHDLVVKVIGGSPN 77 Query: 223 YTMGDIAKE 231 Y G + E Sbjct: 78 YMKGTSSSE 86 >At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laevis, EMBL:XLU66003 Length = 225 Score = 28.7 bits (61), Expect = 4.9 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 121 CREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE--KQRFHEMAEQDKHRFDLEMQNYVP 178 C+ E+K PDV ++S E W ++E + K + + E D ++D + + Sbjct: 58 CKGENKTVLPDVKRTNVSYSFNGEESWQPLTELQGTKCKRCGIYEDDPLKYDTFDEWELC 117 Query: 179 PKDMKVRGR-KRQQMKDPNA 197 P D G KR + K+ NA Sbjct: 118 PSDFTAEGSYKRFKEKEFNA 137 >At2g26580.2 68415.m03189 plant-specific transcription factor YABBY family protein contains Pfam profile: PF04690 YABBY protein Length = 164 Score = 28.3 bits (60), Expect = 6.5 Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237 + P +R SA+ F +E ++KA NP+ + + + WA Sbjct: 100 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 144 >At2g26580.1 68415.m03188 plant-specific transcription factor YABBY family protein contains Pfam profile: PF04690 YABBY protein Length = 164 Score = 28.3 bits (60), Expect = 6.5 Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWA 237 + P +R SA+ F +E ++KA NP+ + + + WA Sbjct: 100 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 144 >At5g23405.2 68418.m02742 high mobility group (HMG1/2) family protein contains Pfam profile PF00505: HMG (high mobility group) box Length = 148 Score = 27.9 bits (59), Expect = 8.6 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 100 RSRPYNKPRGR--MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQR 157 + +P NK + +T +A F+ R+ + Y V SK E W +M+E EK+ Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALV--KEGSKIGWEMWKSMTEDEKKD 110 Query: 158 FHEMA--EQDKHRFDLEMQ 174 + + A E+D+ +E Q Sbjct: 111 YLDKAADEEDEDEDTVEEQ 129 >At5g23405.1 68418.m02741 high mobility group (HMG1/2) family protein contains Pfam profile PF00505: HMG (high mobility group) box Length = 149 Score = 27.9 bits (59), Expect = 8.6 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 100 RSRPYNKPRGR--MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQR 157 + +P NK + +T +A F+ R+ + Y V SK E W +M+E EK+ Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALV--KEGSKIGWEMWKSMTEDEKKD 111 Query: 158 FHEMA--EQDKHRFDLEMQ 174 + + A E+D+ +E Q Sbjct: 112 YLDKAADEEDEDEDTVEEQ 130 >At4g12460.1 68417.m01971 oxysterol-binding family protein similar to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 694 Score = 27.9 bits (59), Expect = 8.6 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 142 KCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPK--DMKVRGRKRQQMKDPNAPK 199 K +E + S +KQ F +++E+D+ F +++ P + ++R ++ DP + Sbjct: 261 KYSECSTSASSDDKQEFEDISEEDEASFHDTKESFGEPDVGSVLTHFKRRTKLPDPAEKE 320 Query: 200 RSLS 203 R +S Sbjct: 321 RGVS 324 >At3g21640.1 68416.m02729 FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to rof1 [Arabidopsis thaliana] GI:1354207; contains Pfam profile: PF00254 FKBP-type peptidyl-prolyl cis-trans isomerases Length = 365 Score = 27.9 bits (59), Expect = 8.6 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 213 RSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266 ++K + G + D K +++A D + + AL+E++KA Y ++ YK Sbjct: 272 KAKAELGQMDSARDDFRK--AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 >At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to At2g17960, At4g36090; contains PF03171 2OG-Fe(II) oxygenase superfamily domain Length = 507 Score = 27.9 bits (59), Expect = 8.6 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 155 KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRS 201 + R+ +MA++D+ FD E + +D +G MK P PK S Sbjct: 137 RMRWADMAQEDE--FDEEEEEEEEERDSSRKGFDASSMKTPEKPKLS 181 >At1g78810.2 68414.m09186 expressed protein Length = 480 Score = 27.9 bits (59), Expect = 8.6 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 14/88 (15%) Query: 175 NYVPPKDMKVRGR-----KRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIA 229 NY+PP D+++ R + ++PN P+ L+ N++R + +G E+ + D+ Sbjct: 49 NYIPPSDLQLLSRYGAVTPQIISRNPNNPQN------LYNNNKRPRPDSGR-EWPVNDVP 101 Query: 230 K--ELGRRWAAADPETKAKYDALSEKDK 255 + G W P K + + EK+K Sbjct: 102 QPPSTGSGWPEYRPCKKTRPISAEEKEK 129 >At1g78810.1 68414.m09185 expressed protein Length = 481 Score = 27.9 bits (59), Expect = 8.6 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 14/88 (15%) Query: 175 NYVPPKDMKVRGR-----KRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIA 229 NY+PP D+++ R + ++PN P+ L+ N++R + +G E+ + D+ Sbjct: 49 NYIPPSDLQLLSRYGAVTPQIISRNPNNPQN------LYNNNKRPRPDSGR-EWPVNDVP 101 Query: 230 K--ELGRRWAAADPETKAKYDALSEKDK 255 + G W P K + + EK+K Sbjct: 102 QPPSTGSGWPEYRPCKKTRPISAEEKEK 129 >At1g23420.1 68414.m02934 inner no outer protein (INO) identical to INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816 Length = 231 Score = 27.9 bits (59), Expect = 8.6 Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADP 241 K P +R+ SA+ F +E ++KA NP + + WA P Sbjct: 130 KPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPP 178 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.130 0.391 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,460,522 Number of Sequences: 28952 Number of extensions: 177111 Number of successful extensions: 598 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 539 Number of HSP's gapped (non-prelim): 55 length of query: 297 length of database: 12,070,560 effective HSP length: 81 effective length of query: 216 effective length of database: 9,725,448 effective search space: 2100696768 effective search space used: 2100696768 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 59 (27.9 bits)
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